Uauy-Lab / expvip-web
expVIP. EXPression and VIsualisation Platform
☆17Updated 2 years ago
Alternatives and similar repositories for expvip-web:
Users that are interested in expvip-web are comparing it to the libraries listed below
- Splice junction analysis and filtering from BAM files☆40Updated 2 years ago
- web documentation for Trinotate☆48Updated 2 years ago
- Analysis of TE contribution to features (transcripts or simple features). Includes utils to test enrichment.☆26Updated 5 years ago
- A (very) simple script to QC Hi-C data.☆25Updated 3 months ago
- JBrowse plugin that supports smallRNA alignments☆12Updated 5 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- An efficient way to guess the library type of your RNA-Seq data.☆30Updated 2 years ago
- an R/Shiny application for interactive creation of non-circular plots of whole genomes☆45Updated 2 years ago
- Evolutionary Transcriptomics with R☆42Updated 2 weeks ago
- De novo annotation of young retrotransposons☆48Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆35Updated last year
- Pipeline for structural variation detection in cohorts☆49Updated 3 years ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆48Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Repository of common bioinformatics scripts☆39Updated 3 years ago
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆54Updated 4 years ago
- R package for inferring copy number from read depth☆32Updated 2 years ago
- Pipeline for annotating genomes using long read transcriptomics data with pinfish☆27Updated 4 years ago
- Genome Annotation Without Nightmares☆43Updated 2 months ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago
- Python package and routines for merging VCF files☆29Updated 3 years ago
- microRNA PREdiction From small RNA-seq data☆29Updated 7 years ago
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆20Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated this week
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 5 months ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Pipeline to identify isoforms from full-length cDNA sequencing data☆24Updated 10 months ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆64Updated last month
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Pipeline to take VCF through to Selection Analysis.☆58Updated 2 years ago