GET_HOMOLOGUES: a versatile software package for pan-genome analysis
☆129Feb 13, 2026Updated 8 months ago
Alternatives and similar repositories for get_homologues
Users that are interested in get_homologues are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A pipeline to select optimal markers for microbial phylogenomics and species tree estimation using the multispecies coalescent and concat…☆60May 7, 2026Updated 5 months ago
- Reference-agnostic Representation and Visualization of Pan-genomes☆19Sep 16, 2021Updated 5 years ago
- Processing pipeline for pan-genome visulization and exploration☆147Oct 9, 2023Updated 3 years ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Jul 1, 2025Updated last year
- An updated pipeline for pangenome investigation☆377Jul 2, 2026Updated 3 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Build a partitioned pangenome graph from microbial genomes☆312Oct 6, 2026Updated last week
- Rapid large-scale prokaryote pan genome analysis☆380Nov 3, 2025Updated 11 months ago
- Talleres Internacionales de Bioinformática - Centro de Ciencias Genómicas, UNAM, Cuernavaca, México☆26Oct 29, 2025Updated 11 months ago
- A Plant Presence/absence Variants Scanner and Pan-genome Construction Pipeline☆27May 24, 2021Updated 5 years ago
- Scripts to do haplotype analysis on pan genomes.☆20Sep 24, 2020Updated 6 years ago
- Synteny and Rearrangement Identifier☆496Jul 1, 2026Updated 3 months ago
- hybrid assembly pipeline for bacterial genomes☆655Jul 29, 2026Updated 2 months ago
- Pan-genome wide association studies☆226May 29, 2024Updated 2 years ago
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated last year
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆129Jun 2, 2026Updated 4 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆103Jul 8, 2022Updated 4 years ago
- Protocol for finding informative protein families and then using them to score metagenomic sets.☆10Oct 11, 2021Updated 5 years ago
- Fast alignment-free pangenome creation and exploration☆28Apr 16, 2020Updated 6 years ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆48Sep 9, 2026Updated last month
- A tool to circularize genome assemblies☆258Apr 6, 2024Updated 2 years ago
- GenoVi, an automated customizable circular genome visualizer for bacteria and archaea☆110Jun 25, 2023Updated 3 years ago
- Scripts for calculating features and regression of prokaryote OGT☆26Feb 13, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pan-genome Construction and Population Structure Variation Calling pipeline☆46Sep 13, 2024Updated 2 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆88Aug 5, 2026Updated 2 months ago
- the pangenome graph builder☆519Jul 24, 2026Updated 2 months ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 8 years ago
- Plot bacterial gene maps and genome comparison plots from command line with genoPlotR and GenomeDiagram☆13Mar 10, 2026Updated 7 months ago
- Mummer alignment tool☆576Feb 4, 2025Updated last year
- Eukaryotic Genome Annotation Pipeline☆401Updated this week
- Genome wide orthology inference and dNdS estimation☆100Oct 9, 2026Updated last week
- Multi-genome synteny block visualization tool☆67Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Fast genome-wide functional annotation through orthology assignment☆794Aug 13, 2026Updated 2 months ago
- A package to annotate protein sequences☆63Feb 23, 2025Updated last year
- ☆45May 8, 2024Updated 2 years ago
- Rapid comparison and dereplication of genomes☆359Oct 9, 2026Updated last week
- A single fast and exhaustive tool for summary statistics and simultaneous *fa* (fasta, fastq, gfa [.gz]) genome assembly file manipulatio…☆131Jun 18, 2026Updated 3 months ago
- Rapid & standardized annotation of bacterial genomes, MAGs & plasmids☆686Updated this week
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆51Jun 7, 2023Updated 3 years ago