eead-csic-compbio / get_homologues
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
☆114Updated last month
Alternatives and similar repositories for get_homologues:
Users that are interested in get_homologues are comparing it to the libraries listed below
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆126Updated last month
- "Reads to report" for public health and clinical microbiology☆139Updated last year
- Convert various sequence formats to FASTA☆135Updated 2 years ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated 11 months ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆135Updated last year
- A toolbox for pangenome analysis and threshold evaluation.☆96Updated 2 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆133Updated last year
- BSR-Based Allele Calling Algorithm☆142Updated last week
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆117Updated last year
- Pan-genome wide association studies☆193Updated 10 months ago
- snipit: summarise snps relative to your reference sequence☆158Updated 3 months ago
- DAS Tool☆147Updated 11 months ago
- DDBJ Fast Annotation and Submission Tool☆80Updated 2 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated last year
- Metagenomic classification of long-read sequencing data☆80Updated 2 weeks ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆82Updated 7 years ago
- ☆125Updated 2 months ago
- Foreign Contamination Screening caller scripts and documentation☆129Updated last month
- Create a tree using Mash distances☆162Updated last year
- A tool for generating consensus long-read assemblies for bacterial genomes☆123Updated last week
- Novelty-inclusive microbial community profiling of shotgun metagenomes☆141Updated this week
- The ARTIC field bioinformatics pipeline☆122Updated 3 weeks ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆206Updated 2 years ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆222Updated last month
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆142Updated last week
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆122Updated 5 months ago
- Nanopore data assembler☆150Updated 3 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆85Updated last year
- Bioinformatics program inStrain☆164Updated last month
- An updated pipeline for pangenome investigation☆295Updated last month