eead-csic-compbio / get_homologuesLinks
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
☆116Updated 3 months ago
Alternatives and similar repositories for get_homologues
Users that are interested in get_homologues are comparing it to the libraries listed below
Sorting:
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆128Updated last month
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆114Updated last year
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- Create a tree using Mash distances☆166Updated last year
- snipit: summarise snps relative to your reference sequence☆161Updated last month
- BSR-Based Allele Calling Algorithm☆147Updated this week
- A toolbox for pangenome analysis and threshold evaluation.☆97Updated 2 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆147Updated this week
- Metagenomic classification of long-read sequencing data☆85Updated last month
- Pan-genome wide association studies☆197Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆121Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated last month
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆117Updated 4 years ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 2 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆130Updated 3 months ago
- "Reads to report" for public health and clinical microbiology☆140Updated last year
- Bioinformatics program inStrain☆173Updated last month
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆86Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆134Updated last year
- ☆71Updated 3 weeks ago
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆231Updated 3 months ago
- Convert various sequence formats to FASTA☆136Updated 2 years ago
- Metatranscriptomics Tutorial☆62Updated last year
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆123Updated last year
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 4 months ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆102Updated 3 years ago
- Processing pipeline for pan-genome visulization and exploration☆139Updated last year
- DAS Tool☆150Updated last year
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆95Updated 2 months ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆202Updated 10 months ago