Alternatives and similar repositories for get_homologues

Users that are interested in get_homologues are comparing it to the libraries listed below

• tseemann / snp-dists
  Pairwise SNP distance matrix from a FASTA sequence alignment
  ☆136Updated last year
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆139Updated last year
• xavierdidelot / ClonalFrameML
  ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes
  ☆114Updated last year
• gbouras13 / hybracter
  Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.
  ☆127Updated 3 weeks ago
• klebgenomics / Kleborate
  ☆125Updated this week
• nmquijada / tormes
  Making whole bacterial genome sequencing data analysis easy
  ☆106Updated last month
• bhattlab / MGEfinder
  A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.
  ☆121Updated last year
• nigyta / dfast_core
  DDBJ Fast Annotation and Submission Tool
  ☆79Updated last month
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆115Updated last year
• SionBayliss / PIRATE
  A toolbox for pangenome analysis and threshold evaluation.
  ☆97Updated 2 years ago
• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆124Updated 7 months ago
• DRL / blobtools
  Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets
  ☆202Updated 9 months ago
• ParkinsonLab / Metatranscriptome-Workshop
  Metatranscriptomics Tutorial
  ☆62Updated last year
• aineniamh / snipit
  snipit: summarise snps relative to your reference sequence
  ☆159Updated 3 weeks ago
• CompSynBioLab-KoreaUniv / FunGAP
  FunGAP: fungal Genome Annotation Pipeline
  ☆111Updated last year
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆104Updated last year
• neherlab / pan-genome-analysis
  Processing pipeline for pan-genome visulization and exploration
  ☆139Updated last year
• transcript / samsa2
  SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…
  ☆57Updated last year
• pierrebarbera / epa-ng
  Massively parallel phylogenetic placement of genetic sequences
  ☆84Updated 2 years ago
• caitiecollins / treeWAS
  treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes
  ☆103Updated 4 months ago
• hahnlab / CAFE
  Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.
  ☆116Updated 4 years ago
• rrwick / Autocycler
  A tool for generating consensus long-read assemblies for bacterial genomes
  ☆137Updated this week
• epi2me-labs / wf-metagenomics
  Metagenomic classification of long-read sequencing data
  ☆83Updated 3 weeks ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆129Updated 2 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆202Updated last year
• donovan-h-parks / CompareM
  A toolbox for comparative genomics.
  ☆103Updated 4 years ago
• qiyunlab / HGTector
  HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
  ☆134Updated last year
• AdmiralenOla / Scoary
  Pan-genome wide association studies
  ☆198Updated last year
• B-UMMI / chewBBACA
  BSR-Based Allele Calling Algorithm
  ☆145Updated last month
• CSB5 / OPERA-MS
  OPERA-MS - Hybrid Metagenomic Assembler
  ☆95Updated 11 months ago