eead-csic-compbio / get_homologuesLinks
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
☆116Updated 3 weeks ago
Alternatives and similar repositories for get_homologues
Users that are interested in get_homologues are comparing it to the libraries listed below
Sorting:
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆115Updated last year
- DDBJ Fast Annotation and Submission Tool☆79Updated 2 months ago
- Making whole bacterial genome sequencing data analysis easy☆108Updated 2 months ago
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆75Updated 2 years ago
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆136Updated last year
- A toolbox for comparative genomics.☆104Updated 4 years ago
- Pairwise SNP distance matrix from a FASTA sequence alignment☆137Updated last year
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆122Updated last year
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆131Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆96Updated 3 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆98Updated 3 years ago
- BSR-Based Allele Calling Algorithm☆148Updated 3 weeks ago
- Metatranscriptomics Tutorial☆63Updated 2 years ago
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆86Updated last year
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆145Updated 2 months ago
- A tool for the identification of coincident (associating and dissociating) genes in pangenomes.☆101Updated last year
- Convert various sequence formats to FASTA☆136Updated 2 years ago
- Development version of Easyfig☆98Updated last year
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆56Updated last year
- "Reads to report" for public health and clinical microbiology☆141Updated last year
- an interactive viewer for populations of bacterial genomes linked by a phylogeny☆125Updated last year
- VIRify: detection of phages and eukaryotic viruses from metagenomic and metatranscriptomic assemblies☆137Updated last week
- Bioinformatics program inStrain☆174Updated 2 months ago
- treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes☆103Updated 5 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆95Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆72Updated last year
- Novelty-inclusive microbial (and now dsDNA phage) community profiling of shotgun metagenomes☆144Updated last week
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆67Updated 2 months ago
- ☆127Updated 2 weeks ago
- Software for prediction of plasmid sequences in metagenomic assemblies☆104Updated 4 years ago