eead-csic-compbio / get_homologues
GET_HOMOLOGUES: a versatile software package for pan-genome analysis
☆110Updated last week
Alternatives and similar repositories for get_homologues:
Users that are interested in get_homologues are comparing it to the libraries listed below
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆113Updated last month
- Pairwise SNP distance matrix from a FASTA sequence alignment☆128Updated 10 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆111Updated 7 months ago
- Analyze changes in gene family size and provide a statistical foundation for evolutionary inferences.☆115Updated 3 years ago
- Metagenomic classification of long-read sequencing data☆69Updated last month
- Pan-genome wide association studies☆173Updated 7 months ago
- A toolbox for comparative genomics.☆99Updated 3 years ago
- DDBJ Fast Annotation and Submission Tool☆78Updated 3 weeks ago
- Foreign Contamination Screening caller scripts and documentation☆111Updated last month
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆114Updated last year
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆119Updated 2 months ago
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆93Updated 9 months ago
- Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data☆110Updated last year
- Version 5 of the CAFE phylogenetics software☆121Updated 2 months ago
- Best-fit model selection☆78Updated 9 months ago
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆132Updated last month
- BSR-Based Allele Calling Algorithm☆138Updated this week
- Making whole bacterial genome sequencing data analysis easy☆102Updated 2 months ago
- Massively parallel phylogenetic placement of genetic sequences☆80Updated 2 years ago
- In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given…☆81Updated 6 years ago
- SAMSA pipeline, version 2.0. An open-source metatranscriptomics pipeline for analyzing microbiome data, built around DIAMOND and customi…☆57Updated 9 months ago
- snipit: summarise snps relative to your reference sequence☆151Updated 2 months ago
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆87Updated last year
- A tool for classifying prokaryote protein sequences into COG(Cluster of Orthologous Genes) functional category☆59Updated 4 months ago
- TEsorter: an accurate and fast method to classify LTR-retrotransposons in plant genomes☆90Updated 3 weeks ago
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆195Updated 4 months ago
- A toolbox for pangenome analysis and threshold evaluation.☆92Updated 2 years ago
- FunGAP: fungal Genome Annotation Pipeline☆109Updated last year
- phyloFlash - A pipeline to rapidly reconstruct the SSU rRNAs and explore phylogenetic composition of an illumina (meta)genomic dataset.☆81Updated last year
- Long-read mock community experiments☆103Updated 3 years ago