metagenomics / metagenomics-tkLinks
The Metagenomics-Toolkit is a scalable, data agnostic workflow that automates the analysis of short and long metagenomic reads obtained from Illumina or Oxford Nanopore Technology devices, respectively.
☆18Updated 2 weeks ago
Alternatives and similar repositories for metagenomics-tk
Users that are interested in metagenomics-tk are comparing it to the libraries listed below
Sorting:
- An integrated database for improving taxonomic classification of 16S Ribosomal RNA sequences.☆18Updated 2 years ago
- Bin Chicken - recovery of low abundance and taxonomically targeted metagenome assembled genomes (MAGs) through strategic coassembly☆48Updated last month
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆35Updated 6 months ago
- TAXnomic Profile Aggregation and STAndardisation☆41Updated 2 months ago
- Bacterial GWAS analysis☆45Updated last week
- A fast and accurate binning refinement tool to constructs high quality MAGs from the output of multiple binning tools.☆40Updated 2 weeks ago
- Strain resolver for metagenomics☆78Updated last year
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆50Updated last month
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆42Updated 3 weeks ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆78Updated last month
- Graph-based assembly phasing☆87Updated 6 months ago
- Phage annotations and predictions. A spae is a prediction or foretelling. We'll foretell you what your phage is doing!☆39Updated last month
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆64Updated 4 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆61Updated 8 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆64Updated last week
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- whole genome MLST analysis☆49Updated 4 months ago
- A toolkit for prokaryotic comparative genomics☆51Updated 2 weeks ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Gene Absence Presence Identification tool.☆27Updated 7 months ago
- IslandPath standalone software☆33Updated last year
- EzAAI - High Throughput Prokaryotic AAI Calculator☆44Updated 3 months ago
- Precise host read removal☆107Updated last month
- PanTax: Strain-level metagenomic profiling using pangenome graphs☆43Updated 2 months ago
- Split Kmer Analysis☆65Updated 3 years ago
- Bioinformatics pipeline for recovery and analysis of metagenome-assembled genomes☆51Updated last week
- Bifrost graph gene caller.☆95Updated last month
- ☆20Updated last year
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- 🚦🧬 Binning Metagenomic Contigs via Composition, Coverage and Assembly Graphs☆66Updated last year