kazumits / ddhodge
Modeling Latent Flow Structure using Hodge Decomposition
☆12Updated last month
Alternatives and similar repositories for ddhodge:
Users that are interested in ddhodge are comparing it to the libraries listed below
- pyGPCCA - python GPCCA: Generalized Perron Cluster Cluster Analysis package to coarse-grain reversible and non-reversible Markov state mo…☆21Updated 2 weeks ago
- PhysiBoSS 2.0: a sustainable integration of stochastic Boolean and agent-based modelling frameworks☆24Updated this week
- Entropy, mutual information and higher order measures from information theory, with various estimators and discretisation methods.☆66Updated 2 years ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆21Updated last month
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆38Updated 2 years ago
- A Julia package for fitting VAEs to single-cell data using count distributions.☆24Updated last year
- Tutorials on using latest dynamo package☆24Updated 5 months ago
- Global Waddington-OT☆23Updated 3 weeks ago
- Dynamic inference from single-cell snapshots by optimal transport☆19Updated last year
- Spatially aware dimension reduction for spatial transcriptomics.☆48Updated last month
- Git Repo for simulating Boolean Models☆33Updated 10 months ago
- Methods for inferring undirected networks from data☆45Updated 4 years ago
- Fast and scalable cell search tool☆43Updated 6 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 3 years ago
- Learning cell fate landscapes from spatial transcriptomics using Fused Gromov-Wasserstein☆12Updated 7 months ago
- MultiMAP for integration of single cell multi-omics☆55Updated last year
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments☆17Updated last year
- Online Principal Component Analysis☆22Updated last week
- A flexible Julia toolkit for high-dimensional cellular profiles☆13Updated last year
- Biologically-informed neural networks☆27Updated 4 years ago
- Analyzing RNA-Seq with approximate likelihood☆26Updated 4 years ago
- Muon for Julia☆28Updated last month
- Huge-scale, high-performance flow cytometry clustering in Julia☆33Updated last year
- Software for in silico evolution - Paul François' group McGill University☆10Updated 3 years ago
- scPrisma is a spectral analysis method, for pseudotime reconstruction, informative genes inference, filtering, and enhancement of underly…☆17Updated last year
- Regulatory networks with Direct Information in python☆40Updated 2 years ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Updated 3 years ago
- Alignment of spatial genomics data using deep Gaussian processes☆27Updated 2 years ago
- A python package implements scTenifoldnet and scTenifoldknk☆11Updated 2 years ago