Alternatives and similar repositories for SingleCell

Users that are interested in SingleCell are comparing it to the libraries listed below

• arc85 / celltalker
  Inference of cell-cell communication from single-cell RNAseq data
  ☆48Updated 7 months ago
• HaojiaWu / plot1cell
  A R package for advanced single cell data viz
  ☆68Updated 3 months ago
• Japrin / STARTRAC
  STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)
  ☆110Updated 7 months ago
• Coolgenome / iTALK
  ☆64Updated 6 years ago
• youqiongye / CRC_scRNAseq
  ☆47Updated 3 years ago
• navinlabcode / HumanBreastCellAtlas
  Repository for codes for the HBCA paper
  ☆39Updated 2 years ago
• harbourlab / uphyloplot2
  Draw phylogenetic trees of tumor evolution
  ☆86Updated 2 years ago
• liziyie / scDVA
  An R shiny based tool used for single cell RNA-seq data visualization and analysis.
  ☆34Updated 4 years ago
• arc85 / singleseqgset
  Gene set enrichment analysis for single-cell RNAseq data
  ☆30Updated 2 years ago
• Dragonlongzhilin / RenalTumor
  Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma
  ☆80Updated last year
• guokai8 / scGSVA
  scGSVA: Perform GSVA for single cell RNA seq
  ☆67Updated last year
• xmc811 / Scillus
  R Package for Single-Cell Dataset Processing and Visualization
  ☆65Updated 4 years ago
• jlaffy / infercna
  Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data
  ☆44Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• KChen-lab / METAFlux
  ☆78Updated last year
• califano-lab / single-cell-pipeline
  ☆50Updated 5 years ago
• RausellLab / CelliD
  Gene signature extraction and cell-identity recognition at individual cell level from single-cell RNA-seq.
  ☆95Updated 2 years ago
• chensujun / scRNA
  ☆32Updated 4 years ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• SiyuanHuang1 / cpplot
  Visualize the results of cell-cell communication analysis
  ☆24Updated 2 years ago
• Coolgenome / TCM
  Codes used in pan-T cell analysis
  ☆64Updated 2 years ago
• FloWuenne / scFunctions
  Functions for single cell data analysis
  ☆32Updated 4 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆90Updated 5 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆77Updated 3 months ago
• jcao89757 / SCINA
  SCINA: A Semi-Supervised Subtyping Algorithm of Single Cells and Bulk Samples
  ☆71Updated 3 years ago
• rpolicastro / scProportionTest
  ☆74Updated 2 years ago
• winstonbecker / scCRC_continuum
  ☆44Updated 3 years ago
• GreenleafLab / 10x-scATAC-2019
  Publication Page for Satpathy*, Granja* et al 2019
  ☆95Updated 5 years ago
• aliceygao / pan-Fibroblast
  ☆53Updated last year
• Xiaxy-XuLab / PanCAF
  ☆37Updated 3 years ago