aalto-ics-kepaco / comboFMView external linksLinks
Machine learning framework for predicting the responses of drug combinations in pre-clinical studies, such as those based on cell lines or patient-derived cells.
☆26Oct 25, 2020Updated 5 years ago
Alternatives and similar repositories for comboFM
Users that are interested in comboFM are comparing it to the libraries listed below
Sorting:
- R functions underlying ExpressAnalyst☆13Feb 7, 2026Updated last week
- a deep learning-based retention time alignment tool for large cohort LC-MS data analysis☆15Dec 6, 2023Updated 2 years ago
- EasyPQP: Simple library generation for OpenSWATH☆11Jan 27, 2026Updated 3 weeks ago
- Code for the combinatorial synthesis library variational auto-encoder (CSLVAE) as described in the paper, "An efficient graph generative …☆14Nov 17, 2023Updated 2 years ago
- Functions to analyze copy number aberrations in single-cell data☆13Feb 3, 2025Updated last year
- ☆15Sep 26, 2025Updated 4 months ago
- Supporting models and data to doi 10.1021/acs.jcim.1c01163☆15Oct 11, 2022Updated 3 years ago
- Code for "Multi-Objective GFlowNets"☆17Jul 12, 2023Updated 2 years ago
- analysis script for GBM single cell RNA seq data☆22May 26, 2021Updated 4 years ago
- Graph-based alignment (Hierarchical Graph FM index)☆17Jul 23, 2019Updated 6 years ago
- ☆21Jul 25, 2024Updated last year
- R package☆22Dec 16, 2023Updated 2 years ago
- Comprehensive cardiotoxicity prediction tool of small molecules on three targets: hERG, Nav1.5, Cav1.2☆20Sep 25, 2024Updated last year
- Code for the paper "JANUS: Parallel Tempered Genetic Algorithm Guided by Deep Neural Networks for Inverse Molecular Design"☆86Jul 27, 2022Updated 3 years ago
- pythonic interface to virtual screening software☆92Sep 4, 2025Updated 5 months ago
- ☆25Aug 24, 2023Updated 2 years ago
- ☆24Sep 26, 2022Updated 3 years ago
- ☆21Feb 6, 2026Updated last week
- MS/MS prediction for peptides☆24Dec 18, 2020Updated 5 years ago
- Scaffold decoration and fragment linking with chemical language models and RL☆26Mar 24, 2025Updated 10 months ago
- Autoregressive fragment-based diffusion for target-aware ligand design☆32May 23, 2024Updated last year
- DEqMS is a tool for quantitative proteomic analysis☆24Apr 16, 2025Updated 10 months ago
- Chemprop benchmarking scripts and data for v1☆31Jun 4, 2024Updated last year
- CASTER: Predicting Drug Interactions with Chemical Substructure Representation (AAAI 2020)☆25Oct 28, 2020Updated 5 years ago
- ☆29Aug 29, 2023Updated 2 years ago
- Code to accompany the paper "Constrained Bayesian Optimisation for Automatic Chemical Design" https://pubs.rsc.org/en/content/articlehtml…☆51Dec 8, 2022Updated 3 years ago
- ☆28Mar 16, 2023Updated 2 years ago
- Improving protein function prediction with synthetic feature samples created by generative adversarial networks☆22Oct 6, 2020Updated 5 years ago
- ☆31Aug 28, 2025Updated 5 months ago
- Official Code Repository for the paper "Mol-LLaMA: Towards General Understanding of Molecules in Large Molecular Language Model"☆29Sep 30, 2025Updated 4 months ago
- Alignment of spatial genomics data using deep Gaussian processes☆31Dec 14, 2022Updated 3 years ago
- Multiple Optimized Specialists for AI-Driven Chemical Predictions☆58Feb 3, 2026Updated 2 weeks ago
- Target-aware Variational Auto-encoders for Ligand Generation with Multimodal Protein Representation Learning☆32May 17, 2024Updated last year
- A false-positive filter for variants called from massively parallel sequencing☆29May 30, 2017Updated 8 years ago
- ☆65May 25, 2021Updated 4 years ago
- A TensorFlow implementation of "Convolutional Networks on Graphs for Learning Molecular Fingerprints".☆30Jun 30, 2017Updated 8 years ago
- DeepGS: Deep Representation Learning of Graphs and Sequences for Drug-Target Binding Affinity Prediction (ECAI 2020)☆26Oct 22, 2020Updated 5 years ago
- This repository contains code for the paper: Beyond Generative Models: Superfast Traversal, Optimization, Novelty, Exploration and Discov…☆133Aug 13, 2024Updated last year
- ☆40Apr 10, 2025Updated 10 months ago