An ensemble method to recover corrupted FASTQ files, drop or fix pesky lines, remove unpaired reads, and settle reads interleaving.
☆34Jan 30, 2025Updated last year
Alternatives and similar repositories for fastqwiper
Users that are interested in fastqwiper are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Basecalling configuration prediction from FASTQ files☆34Mar 17, 2026Updated 6 months ago
- AMR/VF LGT focused bacterial genomics analysis workflow☆28Feb 19, 2026Updated 7 months ago
- PhaseGrass, a reference-based phasing workflow generating chromosome-level haplotype-resolved diploid assembly for highly heterozygous ge…☆17Jun 2, 2026Updated 3 months ago
- ☆12Mar 10, 2024Updated 2 years ago
- Python module to manipulate and visualize minimap2's cs tag☆11Sep 3, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Sep 7, 2026Updated 2 weeks ago
- SISTR (Salmonella In Silico Typing Resource) command-line tool☆38Apr 24, 2025Updated last year
- General purpose utility related to GAF files☆37Aug 6, 2026Updated last month
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆19Aug 30, 2026Updated 3 weeks ago
- Build haplotye and generate figures☆20Nov 4, 2025Updated 10 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆30Jul 18, 2025Updated last year
- Assessing and Improving the quality of metagenomic assemblies☆31Feb 21, 2022Updated 4 years ago
- Scripts to handle NGS data and other biological data☆22Jan 24, 2024Updated 2 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- An R package to call oomycete effectors☆11Aug 31, 2023Updated 3 years ago
- Phasing of dikaryotic fungal genome assemblies☆13Mar 1, 2023Updated 3 years ago
- GpC methylation from fast5:s to reference anchored calls☆10Nov 18, 2020Updated 5 years ago
- Miscellaneous Perl scripts from 20 years in microbial bioinformatics☆18Jul 16, 2024Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆23Jul 22, 2026Updated 2 months ago
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities …☆59Sep 1, 2026Updated 3 weeks ago
- Extracting paths from assembly graphs☆26Jun 22, 2026Updated 3 months ago
- ☆11Nov 17, 2020Updated 5 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- 📦 A Command Line Tool for downloading protein structures, sequences and MSAs☆10Nov 21, 2017Updated 8 years ago
- HyPhy standalone analyses☆56Jan 5, 2026Updated 8 months ago
- Small utility script to submit genomes to PHASTER for phage detection☆26Oct 21, 2021Updated 4 years ago
- A smorgasbord of R functions for performing and teaching population genomic analyses☆19Sep 10, 2026Updated 2 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Cluster informed Shigella and EIEC serotyping tool from Illumina reads and assemblies☆14Jun 30, 2023Updated 3 years ago
- A comprehensive pipeline for RNAseq data analysis☆22Aug 31, 2024Updated 2 years ago
- ASTRAL for PaRalogs and Orthologs☆24Sep 13, 2022Updated 4 years ago
- Repository of the integrated mouse gut metagenomic catalog☆20Mar 14, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆31Jan 12, 2026Updated 8 months ago
- Portable solution to generate genome alignment chains using lastz☆73Sep 4, 2026Updated 3 weeks ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 10 months ago
- PDBe Programming Interfaces information☆14Jul 23, 2018Updated 8 years ago
- De novo construction of isoforms from long-read data☆46Sep 9, 2026Updated 2 weeks ago
- ☆11Jan 12, 2015Updated 11 years ago