jimhester / fasta_utilitiesLinks
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
☆53Updated 9 years ago
Alternatives and similar repositories for fasta_utilities
Users that are interested in fasta_utilities are comparing it to the libraries listed below
Sorting:
- ☆49Updated 10 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆75Updated last year
- A high throughput sequence read toolset using a streaming approach facilitated by Linux pipes☆50Updated 8 months ago
- Tools for detecting DNA modifications from single molecule, real-time sequencing data☆25Updated 3 years ago
- Genome Annotation Without Nightmares☆46Updated 7 months ago
- Converting and demultiplexing of PacBio BAM files into gzipped fasta and fastq files.☆38Updated 2 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 9 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 10 months ago
- convert various features into a GFF-like file for use in genome browsers☆72Updated 2 months ago
- De novo transcriptome assembler for short reads☆63Updated 7 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Structural variant caller☆55Updated 3 years ago
- perSVade: personalized Structural Variation detection☆40Updated last week
- my bin directory☆45Updated 2 weeks ago
- Miscellaneous Bioinformatics scripts etc mostly in Python☆45Updated 3 weeks ago
- Automatically exported from code.google.com/p/prottest3☆37Updated 7 years ago
- Maximum likelihood demultiplexing☆47Updated 7 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Materials for Spring 2021 Applied Genomics Course☆53Updated 4 years ago
- A collection of command line tools for working with sequencing data☆51Updated last month
- PHAST☆75Updated this week
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Pipeline for de novo clustering of long transcriptomic reads☆26Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆73Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆58Updated 8 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆35Updated 7 years ago
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 8 months ago