jimhester / fasta_utilitiesLinks
A collection of scripts developed to interact with fasta, fastq and sam/bam files.
☆53Updated 8 years ago
Alternatives and similar repositories for fasta_utilities
Users that are interested in fasta_utilities are comparing it to the libraries listed below
Sorting:
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Simple code snippets and data for the One Flowcell - One Assembly study☆36Updated 7 years ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- hifiasm_meta - de novo metagenome assembler, based on hifiasm, a haplotype-resolved de novo assembler for PacBio Hifi reads.☆66Updated 5 months ago
- ☆48Updated 6 months ago
- My collection of light bioinformatics analysis pipelines for specific tasks☆74Updated last year
- Structural variant caller☆54Updated 3 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆71Updated 3 years ago
- Error correction for Illumina RNA-seq reads☆67Updated last year
- Genome scaffolding based on HiC data in heterozygous and high ploidy genomes☆60Updated 5 months ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆33Updated last year
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 7 years ago
- Tools for working with second gen assemblies, fasta sequences, etc☆93Updated 8 years ago
- Tools for the analysis of structural variation in genomes☆79Updated last year
- Pipeline for scaffolding and breaking a genome assembly using 10x genomics linked-reads☆22Updated 2 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- a hidden Markov model to infer simple repeats from genome sequences☆37Updated 4 years ago
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated 3 weeks ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Error correction of ONT transcript reads☆58Updated last year
- Automatically exported from code.google.com/p/prottest3☆36Updated 7 years ago
- Code for nanopore paper☆33Updated 9 years ago