Alternatives and similar repositories for kGWASflow

Users that are interested in kGWASflow are comparing it to the libraries listed below

• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆52Updated last month
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆43Updated last year
• HajkD / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆55Updated 2 years ago
• rhysf / Synima
  Synteny Imager
  ☆62Updated 8 months ago
• egluckthaler / starfish
  starfish: a modular toolkit for giant mobile element annotation
  ☆29Updated 5 months ago
• fethalen / Patchwork
  Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data
  ☆36Updated last year
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆66Updated 7 years ago
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆25Updated 4 months ago
• hahnlab / CAGEE
  Computational Analysis of Gene Expression Evolution
  ☆40Updated last month
• robinvanderlee / positive-selection
  Scripts and procedures for detecting positively selected genes and codons in primates
  ☆21Updated 4 years ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆86Updated 3 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year
• johnssproul / RepeatProfiler
  ☆25Updated 2 months ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆36Updated 2 years ago
• mrmckain / Fast-Plast
  Automated de novo assembly of whole chloroplast genomes.
  ☆45Updated 7 months ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆94Updated 2 months ago
• SIWLab / Lab_Info
  info and docs for the Wright Lab
  ☆14Updated 9 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆33Updated last week
• tonig-evo / workshop-popgenome
  Tutorial about R package PopGenome
  ☆41Updated 6 years ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• PombertLab / SYNY
  The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.
  ☆42Updated last month
• irycisBioinfo / PATO
  PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.
  ☆58Updated last year
• enormandeau / gawn
  Genome Annotation Without Nightmares
  ☆44Updated 3 months ago
• rapidspeciation / biodiversity_genomics_course
  biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute
  ☆50Updated 3 months ago
• MikkelSchubert / paleomix
  Pipelines and tools for the processing of ancient and modern HTS data.
  ☆47Updated last month
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆55Updated 2 weeks ago
• MetazoaPhylogenomicsLab / FANTASIA
  ☆26Updated last month