Alternatives and similar repositories for kGWASflow

Users that are interested in kGWASflow are comparing it to the libraries listed below

• jeffersonfparil / compare_genomes
  A comparative genomics workflow using Nextflow, conda, Julia and R
  ☆45Updated last year
• dwinter / pafr
  Read, manipulate and visualize 'Pairwise mApping Format' data in R
  ☆74Updated 4 years ago
• nclark-lab / RERconverge
  Analysis of convergence between organismal traits and DNA/protein sequences
  ☆58Updated last week
• clemgoub / dnaPipeTE
  dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…
  ☆59Updated 2 years ago
• alachins / raisd
  RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors
  ☆36Updated last year
• drostlab / LTRpred
  De novo annotation of young retrotransposons
  ☆48Updated 3 years ago
• genomeannotation / GAG
  Generates an NCBI .tbl file of annotations on a genome.
  ☆68Updated 7 years ago
• DrosophilaGenomeEvolution / TrEMOLO
  Transposable Elements MOvement detection using LOng reads
  ☆25Updated 3 months ago
• Gabaldonlab / perSVade
  perSVade: personalized Structural Variation detection
  ☆40Updated last month
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated last year
• veg / hyphy-analyses
  HyPhy standalone analyses
  ☆47Updated 2 months ago
• PhHermann / LDJump
  R Package to Estimate Variable Recombination Rates using Population Genetic Data
  ☆42Updated 5 years ago
• hillerlab / make_lastz_chains
  Portable solution to generate genome alignment chains using lastz
  ☆59Updated last month
• DamienFr / GC_content_in_sliding_window
  Calculate GC% and GC deviation for circular genomes
  ☆17Updated 2 weeks ago
• stevemussmann / admixturePipeline
  A pipeline that accepts a VCF file to run through Admixture
  ☆63Updated 9 months ago
• clemgoub / TE-Aid
  Annotation helper tool for the manual curation of transposable element consensus sequences
  ☆51Updated 7 months ago
• dwinter / repeatR
  read and analyse RepeatMasker output
  ☆26Updated 2 years ago
• schneebergerlab / findGSE
  findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…
  ☆38Updated last year
• Rosemeis / fastmixture
  Software for ancestry estimation in unrelated individuals
  ☆20Updated 3 weeks ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆93Updated 6 months ago
• Farre-lab / syntenyPlotteR
  R package to draw syntenic plots in 3 different styles
  ☆42Updated 2 months ago
• KamilSJaron / k-mer-approaches-for-biodiversity-genomics
  k-mer learning materials
  ☆80Updated 8 months ago
• phasegenomics / hic_qc
  A (very) simple script to QC Hi-C data.
  ☆26Updated 10 months ago
• petrelharp / local_pca
  Methods for examining PCA locally along the genome.
  ☆85Updated last year
• abacus-gene / paml-tutorial
  paml documentation and tutorials
  ☆62Updated 5 months ago
• johnssproul / RepeatProfiler
  ☆26Updated 8 months ago
• JimWhiting91 / genotype_plot
  A set of functions to visualise genotypes based on a VCF
  ☆87Updated 3 years ago
• tpook92 / HaploBlocker
  R-package: Calculation of haplotype blocks and libraries
  ☆33Updated 3 months ago
• Plant-Food-Research-Open / assemblyqc
  A Nextflow pipeline for evaluating assembly quality
  ☆37Updated 2 weeks ago