akcorut / kGWASflowLinks
kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.
☆39Updated last year
Alternatives and similar repositories for kGWASflow
Users that are interested in kGWASflow are comparing it to the libraries listed below
Sorting:
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Analysis of convergence between organismal traits and DNA/protein sequences☆53Updated last week
- A set of functions to visualise genotypes based on a VCF☆86Updated 3 years ago
- Genome Annotation Without Nightmares☆45Updated 4 months ago
- De novo annotation of young retrotransposons☆48Updated 3 years ago
- Automated de novo assembly of whole chloroplast genomes.☆45Updated 8 months ago
- dnaPipeTE (for de-novo assembly & annotation Pipeline for Transposable Elements), is a pipeline designed to find, annotate and quantify T…☆56Updated 2 years ago
- PhyloAcc a software to detect the changes of conservation of a genomic region☆32Updated last month
- A shiny application to visualize MCscan result☆36Updated 2 years ago
- ☆44Updated 8 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆42Updated 5 years ago
- Tutorial about R package PopGenome☆41Updated 6 years ago
- biodiversity genomics course by Nicol Rueda, Karin Näsvall and Joana Meier from the Wellcome Sanger Institute☆52Updated 4 months ago
- Synteny Imager☆62Updated 9 months ago
- RAiSD: software to detect positive selection based on multiple signatures of a selective sweep and SNP vectors☆36Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆67Updated 7 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆50Updated 6 months ago
- Pinpoints the mutation favored by selection☆34Updated 3 years ago
- HyPhy standalone analyses☆43Updated last month
- findGSE is a tool for estimating size of (heterozygous diploid or homozygous) genomes by fitting k-mer frequencies iteratively with a ske…☆38Updated last year
- A comparative genomics workflow using Nextflow, conda, Julia and R☆44Updated last year
- A (very) simple script to QC Hi-C data.☆25Updated 5 months ago
- ☆26Updated 2 months ago
- SambaR: Snp datA Management and Basic Analyses in R☆28Updated last month
- Pipelines and tools for the processing of ancient and modern HTS data.☆47Updated this week
- web documentation for Trinotate☆48Updated 2 years ago
- ☆73Updated 3 months ago
- info and docs for the Wright Lab☆14Updated 9 years ago
- Conditional Reciprocal Best Blast☆41Updated 8 years ago
- Calculate GC% and GC deviation for circular genomes☆17Updated 4 years ago