Finding Maximal Exact Matches (MEMs) using a Sampled LCP Array
☆10Mar 7, 2024Updated 2 years ago
Alternatives and similar repositories for slaMEM
Users that are interested in slaMEM are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Inducing enhanced suffix arrays for string collections [DCC'16, TCS 2017]☆27Dec 2, 2025Updated 3 months ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated 9 months ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- A Python molecular biology CAD tool with a dead-simple user interface☆12Dec 8, 2022Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform☆17Dec 12, 2022Updated 3 years ago
- 💫 Computer-aided DNA assembly validation and identification from restriction digests.☆15May 29, 2025Updated 9 months ago
- gsufsort: building suffix arrays, LCP-arrays and BWTs for string collections [AMB 2020]☆26Feb 16, 2025Updated last year
- 🎺 Plot DNA digestion band patterns with Python☆20May 12, 2025Updated 10 months ago
- Simulation toolbox for structural variations.☆10May 30, 2019Updated 6 years ago
- Minimalistic aligner which uses Minimap for input mapping locations and Edlib for fast bitvector alignment.☆11Jul 16, 2017Updated 8 years ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Jan 25, 2024Updated 2 years ago
- Ultrafast sequence typing and gene detection from NGS raw reads☆20Apr 15, 2021Updated 4 years ago
- Examples of using Perl to augment NASM and vice versa☆12Oct 21, 2024Updated last year
- the source for dzil.org☆33Feb 23, 2026Updated last month
- C++20 Generalized Suffix Tree implementation☆13Oct 23, 2022Updated 3 years ago
- Python interface for SIMD Smith-Waterman Library☆38May 18, 2022Updated 3 years ago
- ☆15Sep 26, 2019Updated 6 years ago
- An implementation of the 3SPN2 and 3SPN2.C coarse-grained DNA forcefields in OpenMM☆19Jan 12, 2026Updated 2 months ago
- A repository for generating strobemers and evalaution☆79Apr 16, 2024Updated last year
- Snakemake pipeline for benchmarking read mappers☆16Dec 11, 2023Updated 2 years ago
- Roofline prototype for Arm☆14Mar 25, 2024Updated last year
- A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)☆14Apr 23, 2021Updated 4 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Oct 2, 2022Updated 3 years ago
- Identifying misassemblies via deep learning☆11May 1, 2024Updated last year
- Rich Bitcoin cryptographic library for Perl☆17Updated this week
- Python library for primer-based verification of DNA assemblies: primer selection, data analyis, etc.☆33Apr 9, 2025Updated 11 months ago
- Bioinformatics 2020: Graph Neural Networks for DNA Sequence Classification☆33Feb 2, 2021Updated 5 years ago
- Small library of string algorithms☆19Feb 9, 2023Updated 3 years ago
- R Bindings for htslib/bcf☆10Oct 4, 2023Updated 2 years ago
- Assembling the cause of phenotypes and genotypes from NGS data☆29Jun 11, 2020Updated 5 years ago
- An alignment-free, reference-free and incremental data structure for colored de Bruijn graph with application to pan-genome indexing.☆44Jan 28, 2022Updated 4 years ago
- Collection of single header libraries I've written. C++ dynamic array and hashmap, runtime and compile time hashing functions, and a .ply…☆11May 7, 2021Updated 4 years ago
- A fast and efficient short read mapper☆13Nov 7, 2021Updated 4 years ago
- various tools to download, convert and process the full text of scientific articles☆10Apr 2, 2024Updated last year
- Tools to work with 23andMe and AncestryDNA raw files☆12Aug 5, 2017Updated 8 years ago
- Find all significant local alignments between reads☆141Jul 3, 2024Updated last year
- Tools for analyzing and comparing SARS-CoV-2 phylogenies☆10Nov 21, 2020Updated 5 years ago