Shepherd: accurate clustering for correcting DNA barcode errors: https://doi.org/10.1093/bioinformatics/btac395
☆13Oct 15, 2026Updated 2 weeks ago
Alternatives and similar repositories for Shepherd
Users that are interested in Shepherd are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Statistical inference of growth-based deep mutational scanning (DMS) screens☆11Feb 27, 2026Updated 8 months ago
- BMRB data visualization tools using python Plotly☆15Aug 21, 2025Updated last year
- ProGraphMSA is a state-of-the-art multiple sequence alignment tool which produces phylogenetically sensible gap patterns while maintainin…☆11Sep 29, 2020Updated 6 years ago
- Graphical Representation of Ancestral Sequence Predictions☆15Mar 6, 2023Updated 3 years ago
- We present Envision, an accurate predictor of protein variant molecular effect, trained using large-scale experimental mutagenesis data. …☆20Jan 5, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An Efficient DNA Clustering algorithm based on Tree Structure.☆19Mar 28, 2023Updated 3 years ago
- Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models☆13Dec 20, 2022Updated 3 years ago
- Python framework for doing ancestral sequence reconstruction☆45Sep 7, 2026Updated last month
- Python Implementation of A Class of Generalized RS-Codes with Faster Encoding and Decoding Algorithms☆17May 27, 2025Updated last year
- The static pages hosted at http://paperjs.org as the Paper.js website, generated from https://github.com/paperjs/paperjs.org by running i…☆14Oct 21, 2026Updated last week
- A Python API for estimating statistical high-order epistasis in genotype-phenotype maps.☆39Aug 18, 2023Updated 3 years ago
- ☆17Jul 28, 2025Updated last year
- Utilities repository to analyze single-cell data from https://www.nature.com/articles/s41467-018-07261-3.☆10Feb 7, 2020Updated 6 years ago
- A Python module for reading, writing, and manipulating NMR-STAR files.☆30Oct 22, 2026Updated last week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- An innovative GWAS procedure for studies on germplasm population and plant breeding☆14Nov 16, 2020Updated 5 years ago
- Repository for the Data challenge about Software and Statistical Methods for Population Genetics (SSMPG 2017)☆14Sep 19, 2017Updated 9 years ago
- A dataset of real DNA traces for benchmarking trace reconstruction algorithms☆24Nov 18, 2024Updated last year
- ☆37Oct 16, 2024Updated 2 years ago
- Rust bindings for Openslide☆16Oct 19, 2026Updated 2 weeks ago
- Deep DNA Storage: Scalable and Robust DNA-based Storage via Coding Theory and Deep Learning☆24May 13, 2025Updated last year
- Mutato is a toolkit for mutation analysis using DNA sequencing data☆12Nov 20, 2025Updated 11 months ago
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Jul 27, 2020Updated 6 years ago
- ☆21Oct 21, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A Python3 program that counts sequence occurrences in raw FASTQ files.☆11May 19, 2026Updated 5 months ago
- A Deep Learning Model for Predicting Next-Generation Sequencing Depth from DNA Sequence☆23Jul 8, 2021Updated 5 years ago
- ggpie - A ggplot2 extension to create pie, donut and rose pie plot☆50Oct 30, 2023Updated 3 years ago
- Statistical properties of polygenic risk scores☆19Oct 16, 2019Updated 7 years ago
- ☆11Apr 25, 2021Updated 5 years ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆15Mar 14, 2024Updated 2 years ago
- Hidden Sound Explorer☆14Apr 29, 2022Updated 4 years ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆12Jan 7, 2026Updated 9 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆37Oct 26, 2023Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- A set of tools to annotate VCF files with expression and readcount data☆32Oct 13, 2026Updated 3 weeks ago
- Repository for "Nearest neighbor search on embeddings rapidly identifies distant protein relations"☆13Apr 2, 2023Updated 3 years ago
- ☆10Jun 14, 2021Updated 5 years ago
- Simulate short-reads datasets using probabilistic models☆12Jun 1, 2013Updated 13 years ago
- MARS: improving Multiple circular sequence Alignment using Refined Sequences☆33May 2, 2025Updated last year
- ☆24Nov 6, 2021Updated 4 years ago
- Tools for interactive grid creation and manipulation in the console☆14Jun 19, 2022Updated 4 years ago