☆16Apr 8, 2020Updated 6 years ago
Alternatives and similar repositories for SACall-basecaller
Users that are interested in SACall-basecaller are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"☆13Sep 29, 2021Updated 4 years ago
- Training models for basecalling Oxford Nanopore reads☆116Jan 13, 2022Updated 4 years ago
- ☆23Jan 18, 2026Updated 8 months ago
- A PyTorch Basecaller for Oxford Nanopore Reads☆435Feb 20, 2026Updated 7 months ago
- Yet another nanopore modification comparison tool☆12Mar 4, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆17Updated this week
- Very fast ONT basecaller☆52Jun 17, 2022Updated 4 years ago
- Fast bird catching fishes AKA realtime very high accuracy CPU basecaller for Oxford nanopore reads.☆15Oct 6, 2021Updated 4 years ago
- A collection of open source bioinformatics tools developed and used by Addgene.☆11Jun 25, 2026Updated 3 months ago
- A FASTQ lossless compression algorithm especially designed for nanopore sequencing FASTQ files.☆10Jul 2, 2020Updated 6 years ago
- A deep learning-based SNP calling method to identify SNPs based on low-coverage Nanopore sequencing reads.☆22Nov 20, 2022Updated 3 years ago
- A comparison of different Oxford Nanopore basecallers☆316Aug 5, 2019Updated 7 years ago
- modPhred is a pipeline for detection of DNA/RNA modifications from raw ONT data☆16Apr 29, 2024Updated 2 years ago
- Oxford Nanopore Technologies fast5 API software☆155Feb 27, 2024Updated 2 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Ultra-fast methylation calling and event alignment tool for nanopore sequencing data (supports CUDA acceleration)☆165Aug 21, 2026Updated last month
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆27May 9, 2024Updated 2 years ago
- (m)6A (I)dentification Using (N)anopor(E) (S)equencing☆19Nov 25, 2020Updated 5 years ago
- Slow5tools is a toolkit for converting (FAST5 <-> SLOW5), compressing, viewing, indexing and manipulating data in SLOW5 format.☆106Aug 26, 2026Updated 3 weeks ago
- ☆31Jul 28, 2025Updated last year
- A segmentation toolkit for segment the Nanopore RNA signal.☆20Feb 18, 2025Updated last year
- ☆10Mar 11, 2025Updated last year
- A C++ header-only library for reading Oxford Nanopore Fast5 files☆53Jun 27, 2022Updated 4 years ago
- ☆84Jan 6, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆122Oct 20, 2020Updated 5 years ago
- Prediction of RNA modifications and their stoichiometry from per-read features: current intensity, dwell time and trace (Begik*, Lucas* e…☆25Dec 21, 2022Updated 3 years ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Mar 8, 2023Updated 3 years ago
- Flip-flop basecaller for Oxford Nanopore reads☆97Jan 13, 2022Updated 4 years ago
- Visualise and analyse nanopore (ONT) raw signals☆130Jun 11, 2026Updated 3 months ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- ✈Open dataset of airports and flights.☆10Aug 14, 2021Updated 5 years ago
- Hardware Accelerated Read Until☆18Sep 30, 2025Updated 11 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- First version of PORE-cupine. Detecting SHAPE modification using direct RNA sequencing☆15Jul 2, 2023Updated 3 years ago
- Deep learning model used to detect RNA m6a with read level based on the Nanopore direct RNA data.☆22Oct 12, 2022Updated 3 years ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆119Jun 4, 2023Updated 3 years ago
- DRUMMER: Detection of RNA modifications in nanopore direct RNA Sequencing datasets☆21Jul 8, 2022Updated 4 years ago
- An Oxford Nanopore Basecaller☆70Sep 4, 2021Updated 5 years ago
- End-to-end simulation of nanopore sequencing signals with feed-forward transformers☆18Jun 4, 2026Updated 3 months ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year