huangnengCSU / SACall-basecallerLinks
☆15Updated 5 years ago
Alternatives and similar repositories for SACall-basecaller
Users that are interested in SACall-basecaller are comparing it to the libraries listed below
Sorting:
- Predictive kmer models for development use☆62Updated 2 years ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 3 years ago
- Oxford Nanopore Technologies fast5 API software☆154Updated last year
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Updated 2 years ago
- Fast and flexible ORF finder☆76Updated 3 years ago
- a tool for inferring species tree from sequencing reads☆152Updated 2 weeks ago
- Read Until client library for Nanopore Sequencing☆105Updated last year
- RNA secondary structure/sequence profiles for homology search and alignment☆115Updated 11 months ago
- Research release basecalling models and configurations☆114Updated 4 months ago
- Visualise and analyse nanopore (ONT) raw signals☆122Updated last month
- ☆38Updated 4 months ago
- Variant calling tool for long-read sequencing data☆112Updated 7 months ago
- Metabuli: specific and sensitive metagenomic classification via joint analysis of DNA and amino acid.☆149Updated last month
- Aligns short reads using dynamic seed size with strobemers☆178Updated this week
- Using Deep Learning to predict gene annotations☆224Updated last month
- ☆132Updated last year
- a tool for simulating nanopore raw signal data☆70Updated 3 weeks ago
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆172Updated last year
- Detecting methylation using signal-level features from Nanopore sequencing reads☆116Updated 2 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 3 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- Methylation/modified base calling separated from basecalling.☆180Updated last year
- sensitive and precise assembly of short sequencing reads☆161Updated last year
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 3 years ago
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆123Updated 5 years ago
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆84Updated 5 months ago
- ☆76Updated 9 months ago
- Assembled Genomes Compressor☆168Updated 10 months ago
- De novo genome assembler for long uncorrected reads☆226Updated last year
- Tiberius is a deep learning gene finder.☆77Updated this week