huangnengCSU / SACall-basecallerLinks
☆16Updated 5 years ago
Alternatives and similar repositories for SACall-basecaller
Users that are interested in SACall-basecaller are comparing it to the libraries listed below
Sorting:
- Predictive kmer models for development use☆63Updated 2 years ago
- Training models for basecalling Oxford Nanopore reads☆115Updated 4 years ago
- DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications☆104Updated 2 years ago
- Fast and flexible ORF finder☆77Updated 4 years ago
- Variant calling tool for long-read sequencing data☆117Updated 10 months ago
- Xron - an omni basecaller for ONT reads.☆23Updated last year
- Detecting methylation using signal-level features from Nanopore sequencing reads☆118Updated 2 years ago
- Wrapper to read fast5, slow5, blow5 and pod5 files.☆13Updated 10 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads of plants☆64Updated 2 weeks ago
- ☆83Updated last year
- Scrappie is a technology demonstrator for the Oxford Nanopore Research Algorithms group☆93Updated 4 years ago
- ☆22Updated last week
- RNA secondary structure/sequence profiles for homology search and alignment☆122Updated last month
- ClairS - a deep-learning method for long-read somatic small variant calling☆102Updated last week
- Oxford Nanopore Technologies fast5 API software☆153Updated last year
- The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.☆124Updated 5 years ago
- sensitive and precise assembly of short sequencing reads☆163Updated last year
- Visualise and analyse nanopore (ONT) raw signals☆127Updated last month
- a tool for simulating nanopore raw signal data☆72Updated 4 months ago
- a tool for inferring species tree from sequencing reads☆156Updated last month
- DeepEdit: single-molecule detection and phasing of A-to-I RNA editing events using Nanopore direct RNA sequencing☆17Updated 2 years ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆118Updated 6 months ago
- DInoPORE: Direct detection of INOsines in native RNA with nanoPORE sequencing☆19Updated 2 years ago
- Read Until client library for Nanopore Sequencing☆107Updated last year
- PBSIM3: a simulator for all types of PacBio and ONT long reads☆98Updated 9 months ago
- Taxonomic classification of DNA sequences☆57Updated last year
- ☆39Updated last month
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Updated 2 years ago
- Research release basecalling models and configurations☆117Updated 8 months ago
- ☆133Updated last year