onecodex / sars-cov-2Links
SARS-CoV-2 variant calling and consensus assembly pipeline
☆26Updated 2 years ago
Alternatives and similar repositories for sars-cov-2
Users that are interested in sars-cov-2 are comparing it to the libraries listed below
Sorting:
- Malleable All-seeing Journal Of Research Artifacts☆35Updated 2 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- ☆18Updated 8 years ago
- Collection of utilities for working with PacBio-based assemblies☆13Updated 2 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- Docker containers for bioinformatics with a small footprint☆23Updated last month
- map Illumina metagenomes to genomes!☆38Updated 2 weeks ago
- ☆13Updated 8 years ago
- sfasta☆35Updated 9 months ago
- Find Unique genomic Regions☆32Updated 2 weeks ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated last year
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Updated 7 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆21Updated 2 years ago
- Build an index for your BAM Index (BAI)☆17Updated 10 years ago
- Luslab nextflow modules☆14Updated 4 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Updated 2 months ago
- reference free variant assembly☆34Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Updated 2 months ago
- Maximum Likelihood Amplicon Pipeline☆22Updated last year
- UMCU Genetics Nextflow modules☆30Updated last year
- Reference-guided multiple sequence alignment of viral genomes☆70Updated 3 months ago
- MicrobeDirectory 2.0☆22Updated 5 years ago
- Samwell: a python package for using genomic files... well☆20Updated 3 years ago
- ☆23Updated 6 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- 🍶 Genome assembly with short sequence reads☆25Updated 2 years ago
- Main development repository for SpreadGL☆20Updated last year