cbg-ethz / netics
NetICS: network-based integration of multi-omics data for prioritizing cancer genes
☆15Updated 3 years ago
Alternatives and similar repositories for netics:
Users that are interested in netics are comparing it to the libraries listed below
- ☆47Updated 2 years ago
- Splicing-aware time-course network enricher - exploratory analysis for transcriptomics and/or proteomics time series data☆12Updated 9 months ago
- QBRC Neoantigen calling pipeline with CSiN calculation embedded☆24Updated 3 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated last month
- RNA-binding protein motif analysis☆11Updated 9 months ago
- ☆15Updated 2 years ago
- Fast motif matching in R☆47Updated last year
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 9 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- Explore the cancer relevance of your gene list☆51Updated last month
- Accompanying analysis code for the FRASER manuscript☆26Updated 4 years ago
- Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction☆21Updated 2 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆28Updated last week
- ☆38Updated 7 months ago
- Identifying genome-wide translated open reading frames using ribosome profiling☆22Updated last year
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Bioinformatic tool for Splice site Strength Estimation using RNA-seq☆15Updated 2 years ago
- ☆18Updated 2 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆27Updated 6 months ago
- binned motif enrichment analysis and visualisation☆40Updated 3 weeks ago
- An R package for Splice-aware quantification of translation using Ribo-seq data☆18Updated last year
- CLIP-seq Analysis of Multi-mapped reads☆30Updated 3 years ago
- Junction centric alternative splicing translator☆19Updated 2 years ago
- Locate transgenic insertion sites☆11Updated 2 years ago
- Processing workflow for COVID-19 single cell data☆17Updated 3 years ago
- A network-based approach for exon set enrichment☆14Updated 3 weeks ago
- ORF Quantification pipeline for Alternative Splicing☆16Updated 3 years ago
- simplified cellranger for long-read data☆18Updated this week
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago