sinc-lab / miRe2eLinks
☆14Updated 2 years ago
Alternatives and similar repositories for miRe2e
Users that are interested in miRe2e are comparing it to the libraries listed below
Sorting:
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆27Updated last month
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆41Updated last year
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated last year
- Code for LazyAF pipeline☆20Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆38Updated last month
- Multi-Species Codon Optimization Engine☆27Updated 3 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆67Updated 2 years ago
- Long disorder consensus predictor☆16Updated 5 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆15Updated 4 years ago
- ☆26Updated 7 months ago
- Supporting repository for "Protein language models trained on multiple sequence alignments learn phylogenetic relationships" (https://www…☆17Updated 6 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- Arnie-based DegScore tool.☆26Updated 2 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆12Updated 2 months ago
- ☆35Updated 2 years ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆13Updated 3 years ago
- ☆77Updated last year
- Scripts for building computational models of gene regulation with tensorflow☆10Updated 5 years ago
- ☆18Updated last year
- Comprehensive Python client for the Uniprot REST API☆50Updated last month
- GraphPart, a data partitioning method for ML on biological sequences☆28Updated last year
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated 10 months ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆11Updated 3 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago