sinc-lab / miRe2eLinks
☆14Updated 2 years ago
Alternatives and similar repositories for miRe2e
Users that are interested in miRe2e are comparing it to the libraries listed below
Sorting:
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 2 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- Comprehensive Python client for the Uniprot REST API☆52Updated 3 weeks ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Code for LazyAF pipeline☆21Updated last year
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆40Updated 3 weeks ago
- Python package and command line tool for epitope prediction☆52Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆28Updated 10 months ago
- ☆80Updated 2 years ago
- HLA-I ligand predictor☆43Updated last month
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆40Updated last year
- Arnie-based DegScore tool.☆27Updated 3 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- A deep learning-based lncRNA subcellular localization predictor☆16Updated 3 years ago
- ☆21Updated 2 years ago
- Long disorder consensus predictor☆17Updated 2 months ago
- Multi-Species Codon Optimization Engine☆27Updated 3 months ago
- Visualize global properties of large RNAs using GraphViz force-directed layout.☆23Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- A fast, alignment-free method for estimating sequence conservation using protein sequence embedding☆17Updated 2 years ago
- GraphPart, a data partitioning method for ML on biological sequences☆31Updated 2 years ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆33Updated 2 years ago
- ☆33Updated 2 years ago
- Benchmarking Pipeline for Prediction of Protein-Protein Interactions☆13Updated 3 years ago