sinc-lab / miRe2eLinks
☆14Updated 2 years ago
Alternatives and similar repositories for miRe2e
Users that are interested in miRe2e are comparing it to the libraries listed below
Sorting:
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- HLA-II ligand predictor.☆44Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆38Updated last week
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆65Updated 3 years ago
- Interpretation by Deep Generative Masking for Biological Sequences☆37Updated 3 years ago
- Cross-protein transfer learning for variant effect prediction☆20Updated 2 years ago
- Code for LazyAF pipeline☆20Updated last year
- Multi-Species Codon Optimization Engine☆27Updated 2 months ago
- ☆21Updated 2 years ago
- ☆27Updated 9 months ago
- A deep learning-based lncRNA subcellular localization predictor☆16Updated 3 years ago
- Pipeline for de novo peptide sequencing (Novor, DeepNovo, SMSNet, PointNovo, Casanovo) and assembly with ALPS.☆42Updated last year
- ☆80Updated 2 years ago
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 2 years ago
- Stochastic Sequence Propagation - A Keras Model for optimizing DNA, RNA and protein sequences based on a predictor☆50Updated last year
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- Comprehensive Python client for the Uniprot REST API☆51Updated this week
- CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.☆41Updated last year
- GraphPart, a data partitioning method for ML on biological sequences☆30Updated last year
- ☆38Updated 2 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 3 months ago
- ☆34Updated 2 years ago
- Arnie-based DegScore tool.☆26Updated 3 years ago
- surrogate quantitative interpretability for deepnets☆24Updated 2 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- Fast AlphaFold-Multimer based pipeline for Protein-Protein Interaction (PPI) screening☆39Updated last year
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Updated last year
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆33Updated 2 years ago