Alternatives and similar repositories for gMVP

Users that are interested in gMVP are comparing it to the libraries listed below

• TencentAILabHealthcare / DeepAIR
  ☆38Updated 2 years ago
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆74Updated 2 years ago
• ntranoslab / esm-variants
  ☆85Updated 2 years ago
• haiyuan-yu-lab / PIONEER
  ☆29Updated last year
• Tsedao / MultiRM
  [Nat. Commun.] Code for paper 'Attention-based multi-label neural networks for integrated prediction and interpretation of twelve widely …
  ☆33Updated 4 years ago
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆60Updated last month
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆49Updated last week
• FPPGroup / CodonBERT
  CodonBert: a BERT-based architecture tailored for codon optimization using the cross-attention mechanism.
  ☆41Updated last year
• bioinformatics-sannio / ncrna-deep
  Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"
  ☆16Updated 4 years ago
• FunctionLab / tapioca
  a framework for predicting global protein-protein interaction networks from dynamic mass spec data
  ☆24Updated last year
• a96123155 / UTR-LM
  ☆92Updated last year
• tymor22 / protein-vec
  Repository for Protein-Vec, a protein embedding mixture of experts model
  ☆38Updated last year
• songlab-cal / CPT
  Cross-protein transfer learning for variant effect prediction
  ☆20Updated 2 years ago
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 4 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆85Updated 10 months ago
• churchlab / low-N-protein-engineering
  Code and data to reproduce analyses in Biswas et al. (2020) "Low-N protein engineering with data-efficient deep learning".
  ☆60Updated 4 years ago
• BioComputingUP / MobiDB-lite
  Long disorder consensus predictor
  ☆17Updated 4 months ago
• lyjps / Struct2GO
  Struct2GO:protein function prediction based on Graph pooling algorithm and AlphaFold2 structure information
  ☆29Updated last year
• gzBiomedical / EpiScan
  Antibody-Specific Epitope Mapping
  ☆15Updated 4 months ago
• schumacherlab / STAPLER
  STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…
  ☆28Updated 8 months ago
• a96123155 / TransPHLA-AOMP
  ☆48Updated 4 years ago
• kadiliissaar / DeePhase
  DeePhase predictor of homotypic liquid-liquid phase separation of proteins & the code associated with the paper "Learning the molecular g…
  ☆18Updated 4 years ago
• yanzhanglab / Graph2GO
  Graph-based representation learning method for protein function prediction
  ☆24Updated 4 months ago
• TencentAILabHealthcare / ER-BERT
  ☆14Updated 2 years ago
• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆34Updated last year
• GreiffLab / manuscript_ab_epitope_interaction
  ☆25Updated 2 years ago
• Superzchen / iFeatureOmega-CLI
  iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…
  ☆32Updated 2 years ago
• rnajena / EpiDope
  Prediction of B-cell epitopes from amino acid sequences using deep neural networks.
  ☆18Updated 3 years ago
• gitter-lab / nn4dms
  Neural networks for deep mutational scanning data
  ☆72Updated 7 months ago
• RainaBio / GEMORNA
  This repository hosts the software of GEMORNA, a generative AI tool for mRNA sequence design.
  ☆79Updated 2 months ago