surrogate quantitative interpretability for deepnets
☆24Aug 11, 2025Updated 7 months ago
Alternatives and similar repositories for squid-nn
Users that are interested in squid-nn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- ☆11Oct 4, 2021Updated 4 years ago
- Repository for modeling PRO-cap data with the BPNet-like model, ProCapNet.☆20Aug 28, 2025Updated 6 months ago
- Independent evaluation set construction for trustworthy ML models in biochemistry☆16Updated this week
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆43Jul 3, 2025Updated 8 months ago
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Evaluation framework for computationally inferred gene networks from single-cell data.☆18Oct 23, 2025Updated 4 months ago
- Elucidating the Utility of Genomic Elements with Neural Nets☆69Dec 2, 2024Updated last year
- ☆26Sep 9, 2025Updated 6 months ago
- CheMixHub: Datasets and Benchmarks for Chemical Mixture Property Prediction☆27Feb 27, 2026Updated 3 weeks ago
- In-silico Saturation Mutagenesis implementation with 10x or more speedup for certain architectures.☆22Jun 18, 2022Updated 3 years ago
- Dataloader for applying sequence models to personalized genomics☆28Updated this week
- A repo for implementation of Graph features autoencoder for expression values prediction and imputation☆18May 11, 2021Updated 4 years ago
- Source code for fitting thermodynamic models (MoCHI), downstream analyses and to reproduce all figures in the following publication: Mapp…☆22Jul 20, 2023Updated 2 years ago
- ☆34Jan 27, 2025Updated last year
- ☆27Apr 15, 2025Updated 11 months ago
- Log-Polar Space Convolution for Convolutional Neural Networks☆13Dec 12, 2022Updated 3 years ago
- DOLPHIN: Advances Single-cell RNA-seq Analysis Beyond Gene-Level by Integrating Exon-Level Quantification and Junction Reads with Deep Ne…☆14Jul 16, 2025Updated 8 months ago
- Single-cell biological network inference using a heterogeneous graph transformer☆76Feb 24, 2025Updated last year
- ☆19Oct 21, 2024Updated last year
- An open-source platform for developing protein models beyond AlphaFold.☆12Jul 15, 2025Updated 8 months ago
- KDS software for Kinase Drug Selectivity☆11Jun 8, 2023Updated 2 years ago
- AlphaFold version that is extended to integrate diversity parameters for massive sampling.☆16Updated this week
- Dataset and code for ”EATN: An Efficient Adaptive Transfer Network for Aspect-level Sentiment Analysis"☆16Jun 22, 2021Updated 4 years ago
- deep learning-inspired explainable sequence model for transcription initiation☆103Mar 3, 2025Updated last year
- Code used to analyze single cell RNA and ATAC sequencing in developing human brain☆35Jan 4, 2022Updated 4 years ago
- Code for "Using machine learning to combine genetic and environmental data for maize grain yield predictions across multi-environment tri…☆19Jul 23, 2024Updated last year
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆73Apr 28, 2023Updated 2 years ago
- Code repository for the SPOC tool for scoring binary AF-M predicitons.☆15Apr 27, 2025Updated 10 months ago
- VETA - A simple tool do evaluate variant predictors☆11Jun 17, 2024Updated last year
- ☆70Feb 13, 2026Updated last month
- ☆14Oct 17, 2024Updated last year
- code to run sei and obtain sei and sequence class predictions☆111Dec 20, 2022Updated 3 years ago
- Source code and data files for "PEMT: A patent enrichment tool with applicability in drug discovery"☆16Jan 27, 2025Updated last year
- The central entry point to the P2Rank project with links to the individual projects, including references to documentation, datasets, etc…☆13Feb 11, 2026Updated last month
- ☆30Aug 27, 2025Updated 6 months ago
- Pretrained METL models with minimal dependencies☆17Sep 18, 2025Updated 6 months ago
- ☆17Jul 13, 2024Updated last year
- ☆15May 29, 2024Updated last year