Alternatives and similar repositories for deepDNAshape

Users that are interested in deepDNAshape are comparing it to the libraries listed below

• idrblab / AnnoPRO
  Feature map and function annotation of Proteins
  ☆33Updated last year
• bcgsc / AMPlify
  Attentive deep learning model for antimicrobial peptide prediction
  ☆51Updated 4 months ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• PombertLab / 3DFI
  The 3DFI pipeline predicts the 3D structure of proteins and searches for structural homology in the 3D space.
  ☆20Updated last year
• WrightLabScience / EvoWeaver-ExampleCode
  Associated code for EvoWeaver publication
  ☆15Updated 2 months ago
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆89Updated 6 months ago
• kaistsystemsbiology / DeepProZyme
  DeepECtransformer
  ☆26Updated last year
• Protein-Sequence-Annotation / PSALM
  Protein Sequence Annotation with Language Models
  ☆23Updated 2 months ago
• guyleonard / get_jgi_genomes
  A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.
  ☆37Updated 2 months ago
• songlab-cal / CherryML
  Scalable Maximum Likelihood Estimation of Phylogenetic Models
  ☆16Updated 5 months ago
• JJAlmagro / TargetP-2.0
  Detecting Sequence Signals in Targeting Peptides Using Deep Learning
  ☆13Updated 5 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆82Updated 4 months ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated last year
• ntranoslab / esm-variants
  ☆77Updated last year
• samsledje / philharmonic
  Decoding the functional networks of non-model organisms
  ☆11Updated 2 weeks ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 4 months ago
• Sanofi-Public / RiboNN
  RiboNN: predicting translation efficiencies from mRNA sequences
  ☆27Updated last month
• Merck / bgc-pipeline
  ☆11Updated 7 months ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆12Updated 2 years ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆42Updated 7 months ago
• allydunham / sequence_unet
  Fully convolutional deep learning variant effect predictor architecture
  ☆23Updated last year
• idptools / sparrow
  Next generation sequence parameter library for proteins
  ☆34Updated 3 weeks ago
• cbcrg / msa-af2-nf
  Nextflow pipeline for the computation of structure-based MSAs with AlphaFold2 models
  ☆12Updated 2 years ago
• barricklab / ostir
  Software for predicting translation initiation rates in bacteria
  ☆29Updated last week
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• Chokyotager / ORFFinder
  ORFFinder in Python
  ☆15Updated 11 months ago
• mariodosreis / tai
  The tRNA adaptation index
  ☆18Updated 3 months ago
• Illumina / PrimateAI-3D
  ☆66Updated 5 months ago
• ml4bio / Dense-Homolog-Retrieval
  Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval
  ☆115Updated 11 months ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago