JinsenLi / deepDNAshapeLinks
A method to predict DNA shape features considering farther flanking region.
☆38Updated last year
Alternatives and similar repositories for deepDNAshape
Users that are interested in deepDNAshape are comparing it to the libraries listed below
Sorting:
- ☆86Updated 2 years ago
- Associated code for EvoWeaver publication☆16Updated 8 months ago
- HLA-II ligand predictor.☆46Updated 2 years ago
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆12Updated 8 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 10 months ago
- Multi-class signal peptide prediction and structure decoding model.☆102Updated 11 months ago
- ☆20Updated last year
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆16Updated 3 years ago
- A quick and easy way to download the genomes/predicted proteins of taxa available in JGI's Genome Portal.☆38Updated 7 months ago
- Feature map and function annotation of Proteins☆34Updated last year
- Species-aware DNA language models capture regulatory elements and their evolution☆27Updated 2 years ago
- HLA-I ligand predictor☆43Updated 4 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆56Updated 6 years ago
- The tRNA adaptation index☆19Updated 9 months ago
- Decoding the functional networks of non-model organisms☆12Updated last month
- Genomic language model predicts protein co-regulation and function☆85Updated 10 months ago
- Protein Sequence Annotation with Language Models☆27Updated last week
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆20Updated 3 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated 2 weeks ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- Attentive deep learning model for antimicrobial peptide prediction☆55Updated 10 months ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆60Updated last month
- Fully convolutional deep learning variant effect predictor architecture☆23Updated 2 years ago
- ☆72Updated 2 months ago
- ☆32Updated last year
- LucaVirus: Modeling the Evolutionary and Functional Landscape of Viruses with a Unified Genome-Protein Language Model☆59Updated 2 weeks ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆20Updated 7 years ago
- Predicting gene expression levels from genomic sequences☆54Updated 5 years ago
- ☆11Updated 2 years ago