JinsenLi / deepDNAshapeLinks
A method to predict DNA shape features considering farther flanking region.
☆35Updated 11 months ago
Alternatives and similar repositories for deepDNAshape
Users that are interested in deepDNAshape are comparing it to the libraries listed below
Sorting:
- HLA-I ligand predictor☆42Updated 8 months ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- Feature map and function annotation of Proteins☆33Updated last year
- Decoding the functional networks of non-model organisms☆11Updated last month
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆12Updated 3 months ago
- Deep learning embedding for nucleotide sequences☆19Updated 5 months ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆32Updated last month
- ☆77Updated last year
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆19Updated 2 years ago
- ☆65Updated 6 months ago
- DeepECtransformer☆26Updated last year
- Associated code for EvoWeaver publication☆15Updated 3 months ago
- PRedictor of IMmunogenic Epitopes☆24Updated 3 months ago
- Comprehensive Python client for the Uniprot REST API☆51Updated 2 months ago
- Attentive deep learning model for antimicrobial peptide prediction☆52Updated 5 months ago
- Multi-class signal peptide prediction and structure decoding model.☆91Updated 6 months ago
- Fully convolutional deep learning variant effect predictor architecture☆23Updated last year
- Multi-label subcellular localization and sorting signal prediction based on protein foundation models☆18Updated last year
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆17Updated 2 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last month
- Genomic language model predicts protein co-regulation and function☆81Updated 5 months ago
- GraphProt: modelling binding preferences of RNA-binding proteins☆21Updated 7 years ago
- ☆18Updated last year
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Conservation analysis of homologous proteins with Python☆12Updated 4 years ago
- Species-aware DNA language models capture regulatory elements and their evolution☆22Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆72Updated 2 years ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆30Updated 2 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago
- Virus Protein Structural Analysis Toolkit☆12Updated 11 months ago