This is the official codebase for methylGPT : a foundation model for the DNA methylome.
☆55Mar 5, 2026Updated last month
Alternatives and similar repositories for MethylGPT
Users that are interested in MethylGPT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- CpGPT: a Foundation Model for DNA Methylation.☆71Dec 28, 2025Updated 3 months ago
- ☆14Jan 7, 2025Updated last year
- ☆15Jan 27, 2025Updated last year
- Important papers relating to the biology of cell free DNA☆19Sep 21, 2018Updated 7 years ago
- ☆12Dec 4, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Sturgeon is a CNS neural network classifier☆46Jan 22, 2026Updated 2 months ago
- A segmentation approach to analyze DNA methylation patterns and identify differentially methylation regions from whole-genome datasets☆20Feb 16, 2026Updated 2 months ago
- ☆13May 26, 2022Updated 3 years ago
- ☆24Jan 25, 2024Updated 2 years ago
- A microbial genomic analysis pipeline used by the Djordjevic Lab☆13Feb 9, 2025Updated last year
- A web app that statistically predicts your life expectancy based on your inherited risk factors and lifestyle choices, leveraging data fr…☆13Aug 8, 2024Updated last year
- Highly informative TCR representation model☆15Nov 26, 2025Updated 4 months ago
- ☆22Dec 19, 2025Updated 4 months ago
- Machine learning tools for biomarker analysis☆79Apr 8, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Equivariant layers for RC-complement symmetry in DNA sequence data☆12Feb 24, 2022Updated 4 years ago
- Shiny app allowing to convert HTML to R.☆10Sep 8, 2020Updated 5 years ago
- ☆24Dec 2, 2024Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 4 years ago
- Tools for the analysis of heterogeneous tissues☆14Aug 24, 2022Updated 3 years ago
- MGM (Microbial General Model) as a large-scaled pretrained language model for interpretable microbiome data analysis.☆49Jan 26, 2026Updated 2 months ago
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆33Jun 22, 2025Updated 9 months ago
- ☆12Oct 10, 2024Updated last year
- This repository houses scripts for training genetic scores of omic traits in INTERVAL☆28May 31, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Molecular docking with Alchemical Interaction Grids☆30Nov 6, 2025Updated 5 months ago
- RaMWAS: Fast Methylome-Wide Association Study Pipeline for Enrichment Platforms☆10Sep 22, 2021Updated 4 years ago
- Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call …☆17Nov 24, 2025Updated 4 months ago
- ☆13Jun 5, 2024Updated last year
- Map query sequences to the assemblies of all pre-June 2023 bacteria (https://ftp.ebi.ac.uk/pub/databases/AllTheBacteria/Releases/0.2/) on…☆12May 22, 2024Updated last year
- Fit generalized linear models in python.☆28Mar 6, 2023Updated 3 years ago
- DeepMP is a computational tool to detect DNA modifications in Nanopore sequencing data☆27Mar 18, 2022Updated 4 years ago
- ☆15Feb 28, 2025Updated last year
- A Python-based compendium of GPU-optimized aging clocks.☆124Feb 18, 2026Updated 2 months ago
- Deploy open-source AI quickly and easily - Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A simple Bisulfite FastQ Read Simulator (BiQRS)☆13Jul 9, 2024Updated last year
- An Obsidian plugin for web3 composition☆14Oct 28, 2024Updated last year
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- Tensorflow implementation for the Class-wise Selective Rationalization☆14Feb 15, 2023Updated 3 years ago
- ☆13Jun 24, 2019Updated 6 years ago
- TFN layers built using Tensorflow 2☆15Jul 15, 2021Updated 4 years ago
- Epigenomic enrichment analysis of age-related genomic regions☆17Nov 2, 2018Updated 7 years ago