albert-ying / MethylGPTLinks
This is the official codebase for methylGPT : a foundation model for the DNA methylome.
☆48Updated 3 months ago
Alternatives and similar repositories for MethylGPT
Users that are interested in MethylGPT are comparing it to the libraries listed below
Sorting:
- Functional Embedding of Gene Signatures☆47Updated last year
- ☆82Updated 2 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- Predictor of TCR-epitope interactions☆34Updated 2 months ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆73Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 7 months ago
- Comprehensive Python client for the Uniprot REST API☆52Updated last month
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆36Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- ☆96Updated 4 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆35Updated last month
- Generic TCR-epitope recognition prediction using CNN approach on both known and novel epitopes☆17Updated 2 years ago
- RiboNN: predicting translation efficiencies from mRNA sequences☆42Updated last month
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆49Updated last year
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆42Updated 4 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆53Updated 6 years ago
- Collection of papers related to BCR repertoire analyses☆18Updated 3 years ago
- ☆38Updated last year
- HLA-I ligand predictor☆43Updated last month
- Shiny app to easily create publishable plots for scientific papers☆39Updated 3 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆74Updated 8 months ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- ☆27Updated 7 months ago
- ☆42Updated 3 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆105Updated 3 months ago
- STAPLER (Shared TCR And Peptide Language bidirectional Encoder Representations from transformers) is a language model that uses a joint T…☆28Updated 6 months ago