albert-ying / MethylGPTLinks
This is the official codebase for methylGPT : a foundation model for the DNA methylome.
☆50Updated 4 months ago
Alternatives and similar repositories for MethylGPT
Users that are interested in MethylGPT are comparing it to the libraries listed below
Sorting:
- Functional Embedding of Gene Signatures☆48Updated last year
- ☆85Updated 2 years ago
- HLA-II ligand predictor.☆45Updated 2 years ago
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆58Updated 2 weeks ago
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph☆77Updated 9 months ago
- ☆44Updated 2 months ago
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆55Updated 6 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity☆74Updated 2 years ago
- ☆97Updated 6 months ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆34Updated 3 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- a framework for predicting global protein-protein interaction networks from dynamic mass spec data☆24Updated last year
- ☆28Updated 8 months ago
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆32Updated last year
- Shiny app to easily create publishable plots for scientific papers☆39Updated 4 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- Large language modeling applied to T-cell receptor (TCR) sequences.☆57Updated 3 years ago
- ☆97Updated last month
- RiboNN: predicting translation efficiencies from mRNA sequences☆46Updated 2 months ago
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆25Updated 3 years ago
- Scripts and datasets to reproduce the experiment of the paper "Exploring non-coding RNA functions with deep learning tools"☆16Updated 4 years ago
- ☆38Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆66Updated 8 months ago
- ☆69Updated this week
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆37Updated 3 months ago
- Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in geno…☆112Updated last week
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆50Updated last year
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆35Updated 3 years ago