LieberInstitute / INTERACT
☆10Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for INTERACT
- ☆26Updated 9 months ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆44Updated 4 years ago
- ☆29Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆111Updated 2 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆66Updated 4 months ago
- Imputation method for scRNA-seq based on low-rank approximation☆73Updated 10 months ago
- Nextflow pipeline for cross-species integration and assessment of single cell RNA-seq datasets☆33Updated 7 months ago
- identifying disease critical cell types and programs from single cell RNAseq☆50Updated 2 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆23Updated last year
- ☆31Updated 3 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆81Updated 9 months ago
- Python package for analysis of multiomic single cell RNA-seq and ATAC-seq.☆60Updated 6 months ago
- scMEGA: Single-cell Multiomic Enhancer-based Gene regulAtory network inference☆37Updated last month
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆66Updated 2 months ago
- Modular framework for deep learning predictions on methylation data.☆51Updated 4 years ago
- Reproducing all analyses and figures for the ASAP-seq paper☆29Updated 3 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated last year
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆22Updated 8 months ago
- Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks☆26Updated 3 weeks ago
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆73Updated 5 months ago
- Repository for Cibersortx☆51Updated 3 years ago
- Identifying tumor cells at the single-cell level using machine learning☆44Updated this week
- Create cell sentences from sequencing data☆21Updated 3 months ago
- ☆26Updated last year
- Gene group activity utility functions for Scanpy☆56Updated 3 months ago
- ☆24Updated 5 months ago
- MeDuSA is a fine-resolution cellular deconvolution method that leverages scRNA-seq data as a reference to estimate cell-state abundance i…☆38Updated 4 months ago
- ☆20Updated 2 years ago
- Deep Learning based cell composition analysis with Scaden.☆72Updated last week