LieberInstitute / INTERACTLinks
☆11Updated 2 years ago
Alternatives and similar repositories for INTERACT
Users that are interested in INTERACT are comparing it to the libraries listed below
Sorting:
- devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.☆26Updated last year
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆75Updated last year
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆88Updated 4 months ago
- Fast method for inferring cancer clonal population structure from SNV data.☆54Updated 3 weeks ago
- Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data☆43Updated 7 months ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 2 months ago
- Context specific and dynamic gene regulatory network reconstruction and analysis☆119Updated last week
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆63Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆55Updated last month
- Modular framework for deep learning predictions on methylation data.☆53Updated 5 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- ☆31Updated 2 years ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆80Updated 3 years ago
- Scripts + resources for analyzing combinatorial Hi-C data☆30Updated 5 years ago
- Efficient genotyping bi-allelic SNPs on single cells☆145Updated last year
- code to run sei and obtain sei and sequence class predictions☆105Updated 2 years ago
- Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed in…☆83Updated last year
- A pipeline for identifying indel derived neoantigens using RNA-Seq data☆30Updated 2 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago
- Splicing Neo Antigen Finder (SNAF) is an easy-to-use Python package to identify splicing-derived tumor neoantigens from RNA sequencing da…☆47Updated 5 months ago
- circular RNA analysis toolset☆84Updated 10 months ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- A BLAST-like toolkit for large-scale scRNA-seq data querying and annotation.☆93Updated 11 months ago
- epigenome analysis to rank transcription factors☆30Updated 2 years ago
- Full-length transcriptome splicing and mutation analysis☆83Updated last year
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆54Updated last week
- Demultiplexing pooled scRNA-seq data with or without genotype reference☆87Updated 3 months ago
- A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.☆59Updated last year
- optimization of ribosome P-site positioning in ribosome profiling data☆52Updated 4 months ago