Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics
☆13Aug 7, 2020Updated 5 years ago
Alternatives and similar repositories for multiOmicsIntegration
Users that are interested in multiOmicsIntegration are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- Skip the peaks and expose RNA-binding in CLIP data☆10Updated this week
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- ☆14Mar 2, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Feb 28, 2022Updated 4 years ago
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Aug 13, 2021Updated 4 years ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆12Jun 24, 2023Updated 2 years ago
- ☆25Feb 18, 2021Updated 5 years ago
- Transcriptome State Perturbation Generator☆13Dec 3, 2021Updated 4 years ago
- Code for our submitted paper☆10Jul 24, 2023Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- A single-cell RNA-seq data generative model☆18Jan 11, 2025Updated last year
- Large language model Mistral for DNA☆21Sep 12, 2025Updated 7 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- [npj Digital Medicine] "Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence m…☆20Dec 18, 2024Updated last year
- Introduction to Python and Natural Language Technologies (ENVIAUAV35) course☆13Jun 24, 2021Updated 4 years ago
- ☆14Jul 3, 2023Updated 2 years ago
- ☆12Dec 17, 2025Updated 3 months ago
- Patient Code & Text Representation Learning☆19May 22, 2023Updated 2 years ago
- The modern argument parser for c++ tools☆11Mar 31, 2026Updated last week
- Locally Linear Embedding for Regression - Journal of Chemometrics 2015☆11Aug 5, 2015Updated 10 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data☆17Jul 13, 2020Updated 5 years ago
- Reference implementation of the HEAT algorithm described in https://link.springer.com/chapter/10.1007/978-3-030-62362-3_4☆11Mar 24, 2023Updated 3 years ago
- ☆33Jan 28, 2025Updated last year
- Semi-Supervised Regression☆12Jul 19, 2019Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆28Sep 13, 2023Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Dynamic Deep Hit - Pytorch implementation☆32Nov 17, 2025Updated 4 months ago
- Merge transcriptome assemblies☆31Oct 6, 2016Updated 9 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Implementation of LTFH++☆11Nov 17, 2025Updated 4 months ago
- Inferring disease-associated miRNAs☆10Mar 21, 2020Updated 6 years ago
- Assembly of RNA reads to determine the effect of a cancer mutation on protein sequence☆25Updated this week
- This repository contains computer codes for main analyses of the manuscript titled 'Multi-omic Landscape of Airway Microbe-Host Interacti…☆33Aug 16, 2022Updated 3 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 6 years ago
- ScaleSC: A superfast and scalable single cell RNA-seq data analysis pipeline powered by GPU. https://doi.org/10.1093/bioadv/vbaf167☆40Jan 10, 2026Updated 3 months ago
- A set of tools to annotate VCF files with expression and readcount data☆30Jan 30, 2026Updated 2 months ago