Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics
☆13Aug 7, 2020Updated 5 years ago
Alternatives and similar repositories for multiOmicsIntegration
Users that are interested in multiOmicsIntegration are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Core code for the paper "A deep learning model for drug response prediction from cancer genomic signatures and compound chemical structur…☆22Sep 21, 2021Updated 4 years ago
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆14Nov 1, 2024Updated last year
- Skip the peaks and expose RNA-binding in CLIP data☆10Mar 12, 2026Updated last week
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- A mapper for 10x-flex single cell sequencing reads with fixed abstract geometries☆41Mar 3, 2026Updated 2 weeks ago
- ☆13Mar 2, 2026Updated 3 weeks ago
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆18Feb 28, 2022Updated 4 years ago
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Aug 13, 2021Updated 4 years ago
- Code repository site for manuscript: Unraveling the Heterogeneity of Tumor-Infiltrating Myeloid Cells in Immune Checkpoint Blockade: A Si…☆12Jun 24, 2023Updated 2 years ago
- ☆25Feb 18, 2021Updated 5 years ago
- Graph Neural Network model for survival analysis from multi-omics data☆14Mar 9, 2022Updated 4 years ago
- Transcriptome State Perturbation Generator☆13Dec 3, 2021Updated 4 years ago
- Code for our submitted paper☆10Jul 24, 2023Updated 2 years ago
- Corresponding code of 'Quiros A.C.+, Coudray N.+, Yeaton A., Yang X., Chiriboga L., Karimkhan A., Narula N., Pass H., Moreira A.L., Le Qu…☆79Feb 4, 2025Updated last year
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- A single-cell RNA-seq data generative model☆18Jan 11, 2025Updated last year
- Large language model Mistral for DNA☆21Sep 12, 2025Updated 6 months ago
- [npj Digital Medicine] "Harnessing the power of longitudinal medical imaging for eye disease prognosis using Transformer-based sequence m…☆21Dec 18, 2024Updated last year
- Public repo containing code to train, visualize, and evaluate semi-supervised topic models and baselines for regression/classification on…☆12Apr 15, 2020Updated 5 years ago
- Introduction to Python and Natural Language Technologies (ENVIAUAV35) course☆13Jun 24, 2021Updated 4 years ago
- ☆14Jul 3, 2023Updated 2 years ago
- ☆11Dec 17, 2025Updated 3 months ago
- This repository houses scripts for training genetic scores of omic traits in INTERVAL☆28May 31, 2023Updated 2 years ago
- Patient Code & Text Representation Learning☆19May 22, 2023Updated 2 years ago
- The modern argument parser for c++ tools☆11Updated this week
- ☆13Feb 14, 2023Updated 3 years ago
- Locally Linear Embedding for Regression - Journal of Chemometrics 2015☆11Aug 5, 2015Updated 10 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- ISMB 2020: Improved survival analysis by learning shared genomic information from pan-cancer data☆17Jul 13, 2020Updated 5 years ago
- Genome Assembly, de Bruijn Graph, Overlap Graph, Bubbles and Tips Removal, Optimal K-mer, Phi X174 Genome, Error-Prone Reads, Universal C…☆22Apr 28, 2024Updated last year
- ☆20Oct 3, 2022Updated 3 years ago
- Reference implementation of the HEAT algorithm described in https://link.springer.com/chapter/10.1007/978-3-030-62362-3_4☆11Mar 24, 2023Updated 2 years ago
- ☆34Jan 28, 2025Updated last year
- CpGPT: a Foundation Model for DNA Methylation.☆69Dec 28, 2025Updated 2 months ago
- Semi-Supervised Regression☆12Jul 19, 2019Updated 6 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Sep 13, 2023Updated 2 years ago