Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics
☆13Aug 7, 2020Updated 5 years ago
Alternatives and similar repositories for multiOmicsIntegration
Users that are interested in multiOmicsIntegration are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Cantù Lab @ UC Davis - Annotation pipeline - EVM based☆15Nov 1, 2024Updated last year
- Skip the peaks and expose RNA-binding in CLIP data☆10Apr 29, 2026Updated 3 weeks ago
- Imputation of single cell RNA-sequencing data with autoencoder☆16Jun 23, 2021Updated 4 years ago
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆15Feb 17, 2025Updated last year
- ☆14Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Functional annotation pipeline for proteins from non-model organisms implemented in Nextflow☆19Feb 28, 2022Updated 4 years ago
- Experimental evaluation and comparison of multi-omics data integration methods for cancer subtyping☆14Aug 13, 2021Updated 4 years ago
- ☆25Feb 18, 2021Updated 5 years ago
- Code for our submitted paper☆10Jul 24, 2023Updated 2 years ago
- plot genome alignment synteny☆20May 25, 2020Updated 5 years ago
- A single-cell RNA-seq data generative model☆19Jan 11, 2025Updated last year
- Large language model Mistral for DNA☆22Sep 12, 2025Updated 8 months ago
- Public repo containing code to train, visualize, and evaluate semi-supervised topic models and baselines for regression/classification on…☆11Apr 15, 2020Updated 6 years ago
- ☆15Jul 3, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆12Dec 17, 2025Updated 5 months ago
- Patient Code & Text Representation Learning☆19May 22, 2023Updated 3 years ago
- The modern argument parser for c++ tools☆11May 9, 2026Updated 2 weeks ago
- ☆12Feb 14, 2023Updated 3 years ago
- Locally Linear Embedding for Regression - Journal of Chemometrics 2015☆11Aug 5, 2015Updated 10 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Jul 26, 2018Updated 7 years ago
- ☆14Jan 31, 2020Updated 6 years ago
- This repository houses scripts for training genetic scores of omic traits in INTERVAL☆29May 31, 2023Updated 2 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆33Jan 28, 2025Updated last year
- ☆20Oct 3, 2022Updated 3 years ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆28Sep 13, 2023Updated 2 years ago
- Removing PCR duplicates for sequencing reads.☆14Sep 8, 2020Updated 5 years ago
- Dynamic Deep Hit - Pytorch implementation☆32Apr 29, 2026Updated 3 weeks ago
- Merge transcriptome assemblies☆30Oct 6, 2016Updated 9 years ago
- Implementation of LTFH++☆11Nov 17, 2025Updated 6 months ago
- Inferring disease-associated miRNAs☆10Mar 21, 2020Updated 6 years ago
- This repo is be archived, these workflows are still housed housed in the GATK repository under the scripts directory. The workflows are a…☆22Mar 9, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- pipeline for the analysis of small RNA data☆14Jun 24, 2019Updated 6 years ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- MOMA: A Multi-task Attention Learning Algorithm for Multi-omics Data Interpretation and Classification☆19Apr 10, 2023Updated 3 years ago
- Methods for converting eQTL summary statistics into TWAS SNP-weights☆14Jul 2, 2025Updated 10 months ago
- MOGONET (Multi-Omics Graph cOnvolutional NETworks) is a novel multi-omics data integrative analysis framework for classification tasks in…☆181Mar 31, 2021Updated 5 years ago
- ☆10Oct 18, 2021Updated 4 years ago
- This is the GitHub repository for our benchmarking study "Benchmarking of computational error-correction methods for next-generation sequ…☆12Mar 13, 2020Updated 6 years ago