vd4mmind / multiOmicsIntegrationLinks
Github Repository for multiOmics Integration project involving genomics, epigenomics and transcriptomics
☆12Updated 5 years ago
Alternatives and similar repositories for multiOmicsIntegration
Users that are interested in multiOmicsIntegration are comparing it to the libraries listed below
Sorting:
- jupyter notebook; perform differential gene expression analysis using DESeq2 on TCGA RNAseq data☆32Updated 6 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- Integrate Any Omics: Towards genome-wide data integration for patient stratification☆55Updated 2 months ago
- The main repository for ACTIVA: realistic single-cell RNA-seq generation with automatic cell-type identification using introspective vari…☆11Updated 2 years ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆13Updated 3 months ago
- An accurate and efficient deep learning method for single-cell RNA-seq data imputation☆89Updated 3 years ago
- Data and analysis for the Splatter paper☆29Updated 7 years ago
- This is the public repository for the EPIC tool.☆18Updated 3 years ago
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆32Updated 4 months ago
- A repository for sharing information on available COVID-19 RNA-Seq datasets☆80Updated 3 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆31Updated 2 weeks ago
- A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner☆57Updated last week
- ☆10Updated 5 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Collaboration with Montine, Chang, and Montgomery labs on Alzheimers / Parkinson's ATAC-seq analysis☆46Updated 4 years ago
- ☆33Updated 2 years ago
- A generative topic model that facilitates integrative analysis of large-scale single-cell RNA sequencing data.☆50Updated 3 years ago
- Code for the paper "Integrating regulatory DNA sequence and gene expression to predict genome-wide chromatin accessibility across cellula…☆44Updated 4 years ago
- R package to analyze large-scale pharmacogenomic datasets.☆69Updated last month
- Imputation of missing values of a matrix or data.frame using iterative prediction model☆35Updated 5 months ago
- BioBombe: Sequentially compressed gene expression features enhances biological signatures☆66Updated last year
- R package for the identification of cancer-associated mutated genes using gene expression and mutation data.☆10Updated 3 years ago
- A python library for creating simulated regulatory DNA sequences☆38Updated 2 years ago
- Proteome-Wide Association Study☆47Updated 4 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- Generative adversarial networks for single-cell RNA-seq imputation☆39Updated 5 years ago
- Code required to reproduce results from the book chapter "Machine learning from omics data" (Springer Protocols, 2021)☆15Updated 2 years ago
- Deep neural networks for predicting CpG methylation☆37Updated 8 years ago