EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
☆33Jun 22, 2025Updated 9 months ago
Alternatives and similar repositories for EpiGePT
Users that are interested in EpiGePT are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- [NPJ AI] A foundation model for individual genome modelling☆25Apr 10, 2026Updated last week
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Feb 24, 2026Updated last month
- CpGPT: a Foundation Model for DNA Methylation.☆71Dec 28, 2025Updated 3 months ago
- ☆19May 20, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆10Jun 13, 2020Updated 5 years ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated last year
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆22Mar 24, 2026Updated 3 weeks ago
- [NeurIPS 2024] BEACON: Benchmark for Comprehensive RNA Tasks and Language Models☆62Aug 2, 2024Updated last year
- MACA: Marker-based automatic cell-type annotation for single cell expression data☆25Jul 12, 2023Updated 2 years ago
- A versatile single-cell cross-modality translation method via dual-aligned variational autoencoders☆28Jul 1, 2024Updated last year
- Analysis tool for NG-Capture-C, Tri-C and Tiled-C data☆10Oct 13, 2025Updated 6 months ago
- ☆16Sep 24, 2024Updated last year
- ClaMSA (Classify Multiple Sequence Alignments).☆13Nov 21, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆10Oct 24, 2024Updated last year
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- ENNGene: an Easy Neural Network model building tool for Genomics☆11Mar 31, 2022Updated 4 years ago
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- The full training script for Enformer - Tensorflow Sonnet☆18Apr 18, 2022Updated 4 years ago
- ☆11Jun 17, 2023Updated 2 years ago
- Enformer Celltyping is a tensorflow, multi-headed attention based model that incorporates distal effects of Deoxyribonucleic Acid (DNA) i…☆16Jun 25, 2025Updated 9 months ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆44Mar 12, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Feb 15, 2026Updated 2 months ago
- A framework to score and analyze variant effects genome-wide using ChromBPNet models☆16Mar 2, 2026Updated last month
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- ☆11Feb 21, 2023Updated 3 years ago
- This is the official codebase for methylGPT : a foundation model for the DNA methylome.☆55Mar 5, 2026Updated last month
- Patho-DBiT is a platform to spatially decode RNA Biology in archival FFPE tissues.☆13Aug 15, 2024Updated last year
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆17Aug 12, 2022Updated 3 years ago
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- An R package for manipulating phylogentic trees☆11Nov 1, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A set of scripts and functions for analyzing MeDIP-seq datasets☆15Feb 3, 2026Updated 2 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆32Jan 22, 2025Updated last year
- JanusDNA☆27Mar 19, 2026Updated last month
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated last year
- ☆15Aug 6, 2025Updated 8 months ago
- Linear Attention for Efficient Bidirectional Sequence Modeling☆16May 13, 2025Updated 11 months ago
- ☆12Dec 4, 2023Updated 2 years ago