ZjGaothu / EpiGePTLinks
EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
☆28Updated last month
Alternatives and similar repositories for EpiGePT
Users that are interested in EpiGePT are comparing it to the libraries listed below
Sorting:
- code to run sei and obtain sei and sequence class predictions☆106Updated 2 years ago
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆84Updated 2 weeks ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆77Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- ☆67Updated last month
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆35Updated 4 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆89Updated 5 months ago
- RNA-seq prediction with deep convolutional neural networks.☆185Updated 2 months ago
- ☆37Updated 2 years ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- ☆31Updated 6 months ago
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated 3 weeks ago
- A Systematic and Dynamic Pipeline for Single-Cell RNA Sequencing Analysis☆109Updated last year
- What you need to process the Quarterly DepMap-Omics releases from Terra☆119Updated this week
- Pangolin is a deep-learning method for predicting splice site strengths.☆76Updated last year
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph☆86Updated 10 months ago
- A list of positions (mostly biology-related) open to apply☆36Updated 3 months ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)☆234Updated last month
- GeneCompass☆84Updated last month
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 8 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆68Updated last month
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆177Updated 3 weeks ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 8 months ago
- Must-read papers on deep learning based methodology paper for single cell data analysis☆18Updated 4 years ago
- Sequence-based Modeling of single-cell ATAC-seq using Convolutional Neural Networks.☆97Updated 6 months ago
- Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.☆205Updated 2 weeks ago
- ☆65Updated 5 months ago
- Single Cell Analysis Pipelines☆106Updated last week
- ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network☆16Updated 2 months ago
- ☆207Updated last year