Alternatives and similar repositories for EpiGePT:

Users that are interested in EpiGePT are comparing it to the libraries listed below

• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆35Updated 3 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆57Updated last week
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆97Updated 2 years ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆70Updated 7 months ago
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated 3 weeks ago
• jzhoulab / puffin_manuscript
  ☆17Updated 4 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆57Updated last year
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆16Updated last month
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• JiaqiLiZju / Nvwa
  ☆34Updated 2 years ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆93Updated 3 months ago
• epigen / CellWhisperer
  CellWhisperer bridges the gap between transcriptomics data and natural language, enabling intuitive interaction with scRNA-seq datasets
  ☆50Updated 4 months ago
• YeoLab / eCLIP
  ☆37Updated 2 years ago
• GfellerLab / MixTCRpred
  Predictor of TCR-epitope interactions
  ☆21Updated last month
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆47Updated this week
• kundajelab / DART-Eval
  ☆27Updated last month
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆122Updated 2 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆38Updated last month
• MiraldiLab / maxATAC
  Transcription Factor Binding Prediction from ATAC-seq and scATAC-seq with Deep Neural Networks
  ☆27Updated last week
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆56Updated 8 months ago
• cboix / EPIMAP_ANALYSIS
  Epimap processing and analysis code repository
  ☆33Updated 2 years ago
• lanagarmire / Asgard
  ☆41Updated last year
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆51Updated 4 years ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆70Updated 7 months ago
• xiongxslab / Translatomer
  ☆18Updated this week
• d-laub / basenji2-pytorch
  PyTorch implementation of Basenji2.
  ☆15Updated last year
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆21Updated last year
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆77Updated 2 years ago
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆14Updated 2 years ago