Alternatives and similar repositories for EpiGePT

Users that are interested in EpiGePT are comparing it to the libraries listed below

• Illumina / PromoterAI
  ☆78Updated 3 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆96Updated 7 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆79Updated last year
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆92Updated last month
• CompEpigen / methylbert
  A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution
  ☆37Updated 6 months ago
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆109Updated 2 years ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer link prediction
  ☆43Updated 2 weeks ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆64Updated 6 months ago
• xryanglab / RiboMiner
  a toolset for mining multi-dimensional features of the translatome with ribosome profiling data
  ☆18Updated 2 months ago
• bernardo-de-almeida / DeepSTARR
  Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…
  ☆68Updated 2 years ago
• jzhoulab / orca
  sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale
  ☆92Updated 7 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆77Updated last month
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆32Updated 8 months ago
• Illumina / PrimateAI-3D
  ☆67Updated 7 months ago
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆60Updated last year
• tkzeng / Pangolin
  Pangolin is a deep-learning method for predicting splice site strengths.
  ☆80Updated last year
• xiongxslab / Translatomer
  ☆24Updated last month
• ketringjoni / SuPreMo
  Pipeline for generating reference and perturbed sequences for input into predictive models.
  ☆11Updated 10 months ago
• kundajelab / chrombpnet
  Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)
  ☆179Updated 3 weeks ago
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆197Updated last month
• Hughes-Genome-Group / deepC
  A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence
  ☆33Updated last year
• mostafavilabuw / EnformerAssessment
  ☆24Updated last year
• ShenLab-Genomics / SpliceTransformer
  SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence
  ☆29Updated 10 months ago
• YeoLab / eCLIP
  ☆38Updated 3 years ago
• ma-compbio / Higashi
  single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, hypergraph
  ☆89Updated last year
• xCompass-AI / GeneCompass
  GeneCompass
  ☆89Updated 3 months ago
• zhaoweiyu-github / ChromBERT
  ChromBERT: A pre-trained foundation model for context-specific transcription regulatory network
  ☆16Updated 2 weeks ago
• lcamillo / CpGPT
  CpGPT: a Foundation Model for DNA Methylation.
  ☆56Updated last month
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆86Updated 3 years ago
• p-koo / creme-nn
  https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2
  ☆30Updated 8 months ago