ZjGaothu / EpiGePTLinks
EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
☆28Updated 2 months ago
Alternatives and similar repositories for EpiGePT
Users that are interested in EpiGePT are comparing it to the libraries listed below
Sorting:
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 6 months ago
- code to run sei and obtain sei and sequence class predictions☆108Updated 2 years ago
- ☆72Updated 2 months ago
- sequence-based prediction of multiscale genome structure from kilobase to whole-chromosome scale☆92Updated 6 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆78Updated last year
- A modular framework for multimodal cross-cell-type transcriptional regulation models☆87Updated 3 weeks ago
- A Transformer-based model for read-level DNA methylation pattern identification and tumour deconvolution☆36Updated 5 months ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 5 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆44Updated 9 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆71Updated 2 months ago
- ☆31Updated 7 months ago
- RNA-seq prediction with deep convolutional neural networks.☆189Updated this week
- ☆38Updated 2 years ago
- Deep learning model built to quantitatively predict the activities of developmental and housekeeping enhancers from DNA sequence in Droso…☆66Updated 2 years ago
- Deep Learning the T Cell Receptor Binding Specificity of Neoantigen☆84Updated 3 years ago
- A tool for visualising kmers in 2D space.☆10Updated 6 months ago
- PyTorch implementation of Basenji2.☆16Updated 4 months ago
- A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.☆85Updated last week
- a toolset for mining multi-dimensional features of the translatome with ribosome profiling data☆18Updated last month
- MeRIPseqPipe:An integrated analysis pipeline for MeRIP-seq data based on Nextflow.☆41Updated last year
- OCR-Phenotype Association from Tissue-Aware Conservation Inference Toolkit☆18Updated 11 months ago
- ☆23Updated 6 months ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)☆177Updated last month
- Analyses related to the Borzoi paper.☆18Updated 2 months ago
- ☆65Updated 6 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Updated 9 months ago
- Pangolin is a deep-learning method for predicting splice site strengths.☆78Updated last year
- SpliceTransformer(SpTransformer) is a deep learning tool to predict tissue specific splicing site from pre-mRNA sequence☆27Updated 9 months ago
- https://www.biorxiv.org/content/10.1101/2023.07.03.547592v2☆29Updated 7 months ago
- pyJASPAR: A Pythonic interface to JASPAR transcription factor motifs☆29Updated 4 months ago