Library to extract embeddings for DNA sequences using BioFM genomics foundation model
☆19Aug 13, 2025Updated 8 months ago
Alternatives and similar repositories for biofm-eval
Users that are interested in biofm-eval are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated last year
- A Large-Scale Dataset and Framework for Genetic Variant Representation Learning☆33Apr 4, 2026Updated 2 weeks ago
- ☆17Feb 15, 2026Updated 2 months ago
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated last year
- ☆13Apr 23, 2025Updated 11 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆18Jun 19, 2025Updated 10 months ago
- ☆49Mar 22, 2026Updated 3 weeks ago
- [NPJ AI] A foundation model for individual genome modelling☆25Apr 10, 2026Updated last week
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Feb 24, 2026Updated last month
- ☆25Jun 5, 2025Updated 10 months ago
- code to run sei and obtain sei and sequence class predictions☆113Dec 20, 2022Updated 3 years ago
- EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics☆33Jun 22, 2025Updated 9 months ago
- Effect of tokenization on transformers for biological sequence☆22Dec 31, 2025Updated 3 months ago
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆129Oct 31, 2024Updated last year
- Nextflow pipeline to re-process all public single-cell RNA-seq data☆33Jul 9, 2025Updated 9 months ago
- JanusDNA☆27Mar 19, 2026Updated last month
- Linear Attention for Efficient Bidirectional Sequence Modeling☆16May 13, 2025Updated 11 months ago
- A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription☆12Mar 17, 2026Updated last month
- A repository containing the materials required to complete the "AAAI Lab for Innovative Uses of Synthetic Data". This includes tutorials …☆12Sep 4, 2024Updated last year
- A battery of methylation tools for PacBio HiFi reads☆51Dec 2, 2025Updated 4 months ago
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆13Jun 22, 2022Updated 3 years ago
- PathPiece tokenizer☆14Nov 10, 2024Updated last year
- [NeurIPS 2025] Beyond Masked and Unmasked: Discrete Diffusion Models via Partial Masking☆30Mar 18, 2026Updated last month
- ☆46Sep 13, 2023Updated 2 years ago
- ☆20Aug 14, 2025Updated 8 months ago
- M-tree datastructure to perform k-NN searches☆26Nov 5, 2021Updated 4 years ago
- ☆59Nov 7, 2025Updated 5 months ago
- Annotated sequence data☆11Feb 2, 2025Updated last year
- Genomic sequence preprocessing toolkit☆13Jan 13, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Benchmarks for classification of genomic sequences☆174Aug 14, 2025Updated 8 months ago
- ArXiv 每日论文推送助手 自动抓取 ArXiv 最新 AI 论文，使用 DeepSeek 进行深度分析，并推送到飞书。☆51Feb 5, 2026Updated 2 months ago
- RNA-seq prediction with deep convolutional neural networks.☆235Aug 28, 2025Updated 7 months ago
- ☆22Dec 15, 2025Updated 4 months ago
- Pipeline for generating reference and perturbed sequences for input into predictive models.☆11Nov 15, 2024Updated last year
- ☆26Feb 23, 2026Updated last month
- ☆16Oct 26, 2021Updated 4 years ago