MorganLevineLab / PC-Clocks
Code for the calculation and implementation of the PC Based epigenetic clocks
☆52Updated 2 years ago
Alternatives and similar repositories for PC-Clocks:
Users that are interested in PC-Clocks are comparing it to the libraries listed below
- ☆73Updated 2 years ago
- Expression Weighted Celltype Enrichment. See the package website for up-to-date instructions on usage.☆55Updated last week
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆30Updated 2 years ago
- ☆46Updated 3 months ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆90Updated 2 months ago
- published papers with a lot of data☆65Updated last week
- Linseed: LINear Subspace identification for gene Expresion Deconvolution☆29Updated 5 years ago
- Mixed-effect model to test differences in cell type proportions from single-cell data, in R☆99Updated this week
- CAusal Reasoning for Network Identification with integer VALue programming in R☆57Updated last year
- Code related to the Celligner manuscript☆45Updated 4 years ago
- Tools for single-cell data processing☆122Updated 8 months ago
- Single-Cell ENhancer Target gene mapping using multimodal data with ATAC + RNA☆71Updated 5 months ago
- Cross-population polygenic prediction☆77Updated 3 months ago
- Estimation of Promoter Activity from RNA-Seq data☆50Updated 3 years ago
- Find causal cell-types underlying complex trait genetics☆79Updated 4 months ago
- A new extended cell deconvolution for peripheral blood☆16Updated last year
- supporting code for the multinomial single cell RNA-Seq paper☆51Updated 4 years ago
- Matrix eQTL: Ultra fast eQTL analysis via large matrix operations☆70Updated last year
- Reproducibility repository accompanying Wilk, Rustagi, Zhao, et al. "A single-cell atlas of the peripheral immune response to severe COVI…☆49Updated 3 years ago
- Easily install and load packages from the tidyomcis ecosystem☆63Updated 11 months ago
- ☆64Updated last year
- Tutorials and code for ISMB 2019 short course on Recent Advances in Statistical Methods and Computational Algorithms for Single-Cell Omic…☆39Updated 5 years ago
- Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.☆19Updated 4 years ago
- R package to access DoRothEA's regulons☆142Updated 11 months ago
- ☆24Updated 2 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆79Updated last year
- Framework for clustering, phenotyping, pseudotiming and inferring gene regulatory networks from single cell data☆102Updated last year
- scDataviz: single cell dataviz and downstream analyses☆63Updated 3 years ago
- 🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 �…☆41Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆59Updated 6 months ago