MorganLevineLab / PC-ClocksLinks
Code for the calculation and implementation of the PC Based epigenetic clocks
☆60Updated 2 weeks ago
Alternatives and similar repositories for PC-Clocks
Users that are interested in PC-Clocks are comparing it to the libraries listed below
Sorting:
- published papers with a lot of data☆74Updated 8 months ago
- An R interface to enrichR☆93Updated 10 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 7 years ago
- CAusal Reasoning for Network Identification with integer VALue programming in R☆61Updated 2 years ago
- ☆69Updated 7 years ago
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆63Updated 2 weeks ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆124Updated 8 months ago
- Fit Gamma-Poisson Generalized Linear Models Reliably☆119Updated 9 months ago
- PHATE dimensionality reduction method implemented in R☆81Updated 4 years ago
- Bayesian mixed-effect model to test differences in cell type proportions from single-cell data, in R☆117Updated last week
- Pathway-Level Information Extractor (PLIER): a generative model for gene expression data☆54Updated last year
- GENIE3 (GEne Network Inference with Ensemble of trees) R-package☆37Updated 3 years ago
- Repository for the R package EPIC, to Estimate the Proportion of Immune and Cancer cells from bulk gene expression data.☆83Updated 2 years ago
- Tidy R query API for the harmonised and curated CELLxGENE single-cell atlas.☆93Updated last year
- Easily install and load packages from the tidyomics ecosystem☆72Updated 2 months ago
- Code for evaluation of differential expression methods in single-cell RNA-seq data☆112Updated 5 years ago
- Simplify functional enrichment results☆121Updated last year
- This is a tutorial to guide the analysis of RNAseq dataset using footprint based tools such as DOROTHEA, PROGENY and CARNIVAL☆56Updated 2 years ago
- Semi-parametric approach for the inference of gene regulatory networks from time series of expression data☆27Updated 6 months ago
- ☆68Updated 2 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆151Updated 10 months ago
- Visualising data frames as funky heatmaps 📊☆189Updated 2 weeks ago
- Updated implementation of the GSEA-P R application for modern R distributions☆99Updated 4 years ago
- Dynamic models for single-cell RNA-seq time series.☆40Updated 7 years ago
- ☆59Updated last year
- A repository for the design and analysis of pooled single cell RNA-seq perturbation experiments.☆97Updated 6 years ago
- R client for the OmniPath web service☆146Updated 2 weeks ago
- An S3 data object and framework for common quantitative proteomic analyses☆47Updated last week
- An R/Bioconductor package that implements a single-sample molecular phenotyping approach☆46Updated 2 months ago
- Transcriptional burst kinetics inference and analysis described in the article "Genomic encoding of transcriptional burst kinetics" (Lars…☆39Updated last year