☆21Jun 11, 2026Updated 2 months ago
Alternatives and similar repositories for TraitGym
Users that are interested in TraitGym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated last year
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆23Apr 2, 2025Updated last year
- A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription☆15Mar 17, 2026Updated 4 months ago
- Software to perform multi-ancestry SNP fine-mapping on molecular data☆34Aug 7, 2026Updated last week
- Genomic Pre-trained Network☆352Jul 25, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆99Apr 3, 2026Updated 4 months ago
- Analyses related to the Borzoi paper.☆30Dec 14, 2025Updated 8 months ago
- Machine learning methods for DNA sequence analysis.☆65Jul 20, 2026Updated 3 weeks ago
- ☆37Jul 27, 2026Updated 2 weeks ago
- PARM: Promoter Activity Regulatory Model☆25Jul 27, 2026Updated 2 weeks ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆98Jun 10, 2026Updated 2 months ago
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Aug 4, 2026Updated last week
- JanusDNA☆32Mar 19, 2026Updated 4 months ago
- ☆18Apr 23, 2026Updated 3 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Biwhitened PCA☆15Mar 18, 2026Updated 4 months ago
- ☆52Mar 22, 2026Updated 4 months ago
- Conditionally Site-Independent Neural Evolution of Antibody Sequences (ICML '26)☆24May 9, 2026Updated 3 months ago
- ☆19May 29, 2026Updated 2 months ago
- ☆19Updated this week
- Causal Differential Networks (ICML 2025)☆16Jun 3, 2025Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆26Jun 26, 2024Updated 2 years ago
- ☆17Jan 30, 2026Updated 6 months ago
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- [NPJ AI] A foundation model for individual genome modelling☆28May 9, 2026Updated 3 months ago
- ☆20Dec 20, 2025Updated 7 months ago
- Decima is a Python library to train sequence models on single-cell RNA-seq data.☆81Jun 4, 2026Updated 2 months ago
- A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learn…☆12May 19, 2021Updated 5 years ago
- ☆21Feb 26, 2026Updated 5 months ago
- GWAS catalogue for Arabidopsis thaliana☆11Feb 29, 2024Updated 2 years ago
- Benchmarks for classification of genomic sequences☆182Aug 14, 2025Updated last year
- MaveDB API☆17Updated this week
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆23Dec 16, 2025Updated 7 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- Model zoo for genomics☆175Dec 17, 2025Updated 7 months ago
- RNA-seq prediction with deep convolutional neural networks.☆259Aug 28, 2025Updated 11 months ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated last week
- MaxToki: an autoregressive single-cell language model built on BioNeMo/NeMo/Megatron.☆28Jul 28, 2026Updated 2 weeks ago
- Biological sequence analysis for the modern age.☆308Jul 19, 2026Updated 3 weeks ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago