☆17Feb 15, 2026Updated 2 months ago
Alternatives and similar repositories for TraitGym
Users that are interested in TraitGym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [NeurIPS 2024] Model Decides How to Tokenize: Adaptive DNA Sequence Tokenization with MxDNA☆22Apr 2, 2025Updated last year
- Analyses related to the Borzoi paper.☆26Dec 14, 2025Updated 4 months ago
- A mutation rate model at the basepair resolution identifies the mutagenic effect of Polymerase III transcription☆12Mar 17, 2026Updated last month
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆19Aug 13, 2025Updated 8 months ago
- [NPJ AI] A foundation model for individual genome modelling☆25Apr 10, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A Large-Scale Dataset and Framework for Genomic Foundation Model Benchmarking☆32Apr 19, 2026Updated 2 weeks ago
- ☆45Jan 27, 2026Updated 3 months ago
- ☆96Apr 3, 2026Updated last month
- Machine learning methods for DNA sequence analysis.☆63Feb 27, 2026Updated 2 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆24Jun 26, 2024Updated last year
- A highly scalable and accurate inference of gene expression and structure for single-cell transcriptomes using semi-supervised deep learn…☆10May 19, 2021Updated 4 years ago
- Benchmarks for classification of genomic sequences☆174Aug 14, 2025Updated 8 months ago
- GWAS catalogue for Arabidopsis thaliana☆11Feb 29, 2024Updated 2 years ago
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆112Dec 10, 2025Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Genomic Pre-trained Network☆338Mar 25, 2026Updated last month
- Evolution-inspired data augmentations for PyTorch-based models for regulatory genomics☆25Jun 3, 2025Updated 11 months ago
- Model zoo for genomics☆174Dec 17, 2025Updated 4 months ago
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Bulk (CP/GZ) and single-cell Iso-Seq in the developing human brain☆16May 30, 2024Updated last year
- Toolset for training quantitative sequence to function models.☆23Mar 15, 2024Updated 2 years ago
- A multi-thread tool for identifying DNA methylation motifs from Pacbio reads☆11Mar 7, 2018Updated 8 years ago
- ☆11May 5, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Resources for few-shot reasoning tutorial☆15Apr 2, 2026Updated last month
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆131Oct 31, 2024Updated last year
- Remasking Discrete Diffusion Models with Inference-Time Scaling☆73Feb 7, 2026Updated 2 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆323Apr 14, 2026Updated 3 weeks ago
- Differential quantification of alternative splicing events on spliced pangenome graphs☆16Jan 30, 2026Updated 3 months ago
- Code repository for the paper "Towards a Comprehensive Evaluation of Dimension Reduction Methods for Data Visualization"☆13Jul 4, 2024Updated last year
- JanusDNA☆29Mar 19, 2026Updated last month
- Perturbational analysis by causality-aware generative model for single-cell RNA-sequencing data☆21Dec 16, 2025Updated 4 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆95Nov 13, 2025Updated 5 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Detecting cancer subtypes with machine learning.☆10Feb 5, 2020Updated 6 years ago
- code to run sei and obtain sei and sequence class predictions☆113Dec 20, 2022Updated 3 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Apr 28, 2026Updated last week
- "Global Importance Analysis: A Method to Quantify Importance of Genomic Features in Deep Neural Networks" by Koo et al.☆13Jun 22, 2022Updated 3 years ago
- ☆13Oct 15, 2024Updated last year
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Feb 24, 2026Updated 2 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆200Mar 16, 2024Updated 2 years ago