KirillKryukov / nafLinks
Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
☆58Updated 10 months ago
Alternatives and similar repositories for naf
Users that are interested in naf are comparing it to the libraries listed below
Sorting:
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 8 months ago
- BWT construction and search☆116Updated this week
- Pan-Genomic Matching Statistics☆52Updated last year
- Kmer-db is a fast and memory-efficient tool for large-scale k-mer analyses (indexing, querying, estimating evolutionary relationships, et…☆91Updated 2 months ago
- vcfdist: Accurately benchmarking phased variant calls☆82Updated last week
- REINDEER REad Index for abuNDancE quERy☆58Updated 2 weeks ago
- ☆67Updated last year
- Interactive visualization of assembly graphs☆82Updated 3 years ago
- ☆63Updated last week
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆71Updated 4 years ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆61Updated this week
- Banded Striped DNA Sequence Alignment☆45Updated 2 years ago
- A versatile toolkit for k-mers with taxonomic information☆78Updated 11 months ago
- Core library of the Genome Analysis Toolbox with de-Bruijn graph☆63Updated 5 months ago
- A tool for Racon polishing of miniasm assemblies☆76Updated last month
- Assembled Genomes Compressor☆167Updated 7 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Visualize whole genome alignments as linear maps☆73Updated 9 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 4 months ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- ☆34Updated last year
- Python bindings to spoa☆20Updated last year
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Efficient low-divergence mapping of long reads in minimizer space☆67Updated last year
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆64Updated last year