Nucleotide Archival Format - Compressed file format for DNA/RNA/protein sequences
☆64Aug 1, 2025Updated last year
Alternatives and similar repositories for naf
Users that are interested in naf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multiple Bacteria Genome Compressor (MBGC)☆13Jun 1, 2026Updated 2 months ago
- Just another minhash implementation.☆12May 28, 2026Updated 2 months ago
- URMAP ultra-fast read mapper☆38Jun 15, 2020Updated 6 years ago
- ☆14Dec 26, 2025Updated 7 months ago
- FaStore - high-performance FASTQ files compressor☆19May 19, 2022Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- FQSqueezer - FASTQ compressor based on k-mer statistics☆18Feb 24, 2024Updated 2 years ago
- Rust coder/decoder for Nucleotide Archival Format (NAF) files.☆10Jan 31, 2025Updated last year
- PgRC: Pseudogenome based Read Compressor☆14Nov 20, 2024Updated last year
- Parallel Construction of Suffix Arrays in Rust☆26Updated this week
- ☆14Jan 31, 2020Updated 6 years ago
- Fast, parallel Rust implementation of Prodigal for prokaryotic gene prediction in microbial genomes☆29Jul 26, 2026Updated 2 weeks ago
- Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop☆75Apr 1, 2026Updated 4 months ago
- toolkit for file system virtualisation of random access compressed FASTA, FAI, DICT & TWOBIT files☆22Jul 23, 2026Updated 2 weeks ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- mreps: software for tandem repeat identification in DNA☆15Nov 13, 2019Updated 6 years ago
- Plugin that provides pairing functions to the Polars library☆14Feb 14, 2025Updated last year
- Fast hash function for DNA/RNA sequences☆111Aug 3, 2026Updated last week
- Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!☆27Mar 25, 2026Updated 4 months ago
- Rust library for processing sequencing reads.☆25Sep 2, 2024Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- A SIMD-accelerated library to compute random minimizers☆46Jul 7, 2026Updated last month
- Yet Another Chimeric Read Detector☆88Nov 7, 2024Updated last year
- MONI: A Pangenomic Index for Finding MEMs☆38Mar 25, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A tool for Racon polishing of miniasm assemblies☆82Jul 24, 2026Updated 2 weeks ago
- SWORD - a highly efficient protein database search☆26Jan 15, 2024Updated 2 years ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57May 29, 2024Updated 2 years ago
- PyO3 bindings and Python interface to sylph, an ultrafast method for containment ANI querying and taxonomic profiling.☆20Dec 12, 2024Updated last year
- A genomic minhashing implementation in Rust☆103Jul 8, 2026Updated last month
- HyGen: Compact and Efficient Genome Sketching using Hyperdimensional Vectors☆33Aug 26, 2024Updated last year
- A Rust library for parsing, writing and manipulating Genbank sequence files☆24Apr 20, 2025Updated last year
- Benchmarking programming languages/implementations for common tasks in Bioinformatics☆185Dec 9, 2021Updated 4 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- Remove human reads from a sequencing run☆52Jun 29, 2026Updated last month
- Fast and Memory Efficient Genome Sketching via HyperLogLog, HyperMinHash, UltraLogLog and ExaLogLog☆22Jul 29, 2026Updated last week
- Fast sequence distance estimates☆30Aug 3, 2026Updated last week
- ♥ Essential Functions for DNA Manipulation☆20Jun 15, 2025Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Dec 30, 2020Updated 5 years ago
- ✏️ Genome assembly polishing & SNV detection☆74Jun 12, 2026Updated last month