nanoporetech / pyspoaLinks
Python bindings to spoa
☆20Updated last year
Alternatives and similar repositories for pyspoa
Users that are interested in pyspoa are comparing it to the libraries listed below
Sorting:
- Tumour-only somatic mutation calling using long reads☆26Updated 7 months ago
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆40Updated last month
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 6 months ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 3 weeks ago
- ☆34Updated 5 years ago
- REINDEER REad Index for abuNDancE quERy☆58Updated 10 months ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆35Updated this week
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆49Updated 2 months ago
- A python tool box for fast and accurate quality control, conversion and alignment of nanopore sequencing data☆20Updated 2 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Pan-Genomic Matching Statistics☆52Updated last year
- Full-length de novo viral haplotype reconstruction from noisy long reads☆20Updated last year
- Correcting errors in noisy long reads using variation graphs☆51Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆80Updated last month
- A versatile pairwise aligner for genomic and spliced nucleotide sequences☆54Updated last year
- Fast and scalable nanopore adaptive sampling☆33Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated last week
- ☆48Updated 11 months ago
- Symmetric DUST for finding low-complexity regions in DNA sequences☆42Updated last year
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆67Updated 7 months ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Call select base modifications in PacBio HiFi reads☆7Updated 4 months ago
- ☆62Updated last week
- GFA insert into GenomicSQLite☆49Updated 3 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Updated 2 years ago
- ☆80Updated 3 months ago
- VNTR annotation using motif selection☆35Updated this week
- ☆28Updated last week
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago