nanoporetech / pyspoaLinks
Python bindings to spoa
☆21Updated last week
Alternatives and similar repositories for pyspoa
Users that are interested in pyspoa are comparing it to the libraries listed below
Sorting:
- MarginPolish: Graph based assembly polishing☆47Updated 5 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated last year
- ☆67Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 5 months ago
- Gfapy: a flexible and extensible software library for handling sequence graphs in Python☆71Updated last month
- Tumour-only somatic mutation calling using long reads☆28Updated last year
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Updated 2 months ago
- Python client library for Guppy☆32Updated 3 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆68Updated last year
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆36Updated 3 weeks ago
- lossless nanopore pod5 <=> s/blow5 file conversion☆44Updated 3 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆52Updated 9 months ago
- BWT construction and search☆122Updated this week
- ☆68Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated 3 months ago
- Full-length de novo viral haplotype reconstruction from noisy long reads☆21Updated 2 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- A local-haplotagging-based small and structural variant caller☆89Updated 3 weeks ago
- Banded Striped DNA Sequence Alignment☆49Updated 2 years ago
- Identify long STRs, VNTRs, satellite DNA and other low-complexity regions in a genome☆82Updated 2 weeks ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- Python3 module for running MUMmer and reading the output☆33Updated 8 months ago
- Correcting errors in noisy long reads using variation graphs☆50Updated 3 years ago
- Python bindings to bwa mem☆32Updated 5 years ago
- NanoReviser: An Error-correction Tool for Nanopore Sequencing Based on a Deep Learning Algorithm☆28Updated last year
- ☆36Updated 10 months ago
- ☆35Updated 5 years ago