gear-genomics / tracyLinks
Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
☆118Updated last week
Alternatives and similar repositories for tracy
Users that are interested in tracy are comparing it to the libraries listed below
Sorting:
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated this week
- a tool for designing primer panels for multiplex PCR.☆105Updated last year
- Sequana: a set of Snakemake NGS pipelines☆148Updated 2 weeks ago
- A tool to identify, orient, trim and rescue full length cDNA reads☆83Updated 3 years ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- a tool for inferring species tree from sequencing reads☆152Updated last month
- Processing pipeline for pan-genome visulization and exploration☆141Updated 2 years ago
- Variant calling tool for long-read sequencing data☆112Updated 7 months ago
- Python programs for processing GFF3 files☆101Updated last year
- A fast Python and command-line utility for extracting simple statistics against genome positions based on sequence alignments from a SAM …☆194Updated last month
- CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)☆124Updated last year
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆142Updated 3 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- GenMap - Fast and Exact Computation of Genome Mappability☆113Updated last year
- LongQC is a tool for the data quality control of the PacBio and ONT long reads.☆173Updated last year
- ShortStack: Comprehensive annotation and quantification of small RNA genes☆94Updated last week
- Read Until client library for Nanopore Sequencing☆106Updated last year
- Research release basecalling models and configurations☆115Updated 5 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- ☆123Updated 3 months ago
- Benchmarking of long-read assembly tools for bacterial whole genomes☆172Updated 4 years ago
- A package for designing compact and comprehensive capture probe sets.☆89Updated last year
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 4 months ago
- Detecting methylation using signal-level features from Nanopore sequencing reads☆117Updated 2 years ago
- An ultra-fast tool for identification of SARS-CoV-2 and other microbes from sequencing data. This tool can be used to detect viral infect…☆117Updated 2 years ago
- UCSC Nanopore group's software pipeline for reference-based sequence analysis☆55Updated 10 years ago
- SALSA: A tool to scaffold long read assemblies with Hi-C data☆187Updated last year
- Tools for plotting methylation data in various ways☆162Updated 2 weeks ago
- Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)☆117Updated 3 months ago
- Analysis components from Oxford Nanopore Research☆96Updated last year