Basecalling, alignment, assembly and deconvolution of Sanger Chromatogram trace files
β122May 11, 2026Updated last month
Alternatives and similar repositories for tracy
Users that are interested in tracy are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Indigo: SNV and InDel Discovery in Chromatogram traces obtained from Sanger sequencing of PCR productsβ36May 4, 2026Updated last month
- 𧬠Chromatogram File Utils, a package that integrates trace visualization, mutation calling and quality control for Sanger sequencing datβ¦β23May 22, 2025Updated last year
- User-friendly software for viewing and processing Sanger DNA sequencing trace files.β33Mar 27, 2018Updated 8 years ago
- A Python module to analyze Sanger sequencing results.β26Dec 6, 2023Updated 2 years ago
- functions to analyse sanger sequencing reads in Rβ104May 6, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- CutePeaks is a standalone Sanger trace viewer steered by a modern and user-friendly UI.β48May 5, 2026Updated last month
- ClassifyCNV: a tool for clinical annotation of copy-number variantsβ73Jun 26, 2023Updated 2 years ago
- Staden Package "io_lib" (sometimes referred to as libstaden-read by distributions). This contains code for reading and writing a varieβ¦β41May 21, 2026Updated 3 weeks ago
- Automated Sanger Analysis Pipeline (ASAP): a tool for rapidly analyzing Sanger sequencing data with minimum user interference.β26Feb 13, 2025Updated last year
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.β79Jun 30, 2025Updated 11 months ago
- genetic variant expressions, annotation, and filtering for great good.β275May 12, 2026Updated last month
- MEM mapper prototypeβ13Nov 28, 2020Updated 5 years ago
- In-silico PCR, primer design and padlock design for in-situ sequencingβ54Apr 7, 2026Updated 2 months ago
- Alignment and variant-calling pipeline for Illumina HIV sequences.β11May 19, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off β’ AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- β47Oct 2, 2023Updated 2 years ago
- Multiplex PCR design, in silicoβ20Mar 4, 2025Updated last year
- 𧬠MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotationsβ38May 21, 2024Updated 2 years ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequencesβ13Mar 4, 2026Updated 3 months ago
- Find common blocks and differences between DNA sequencesβ44Nov 5, 2025Updated 7 months ago
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:β90Aug 7, 2023Updated 2 years ago
- Plot structural variant signals from many BAMs and CRAMsβ567Jul 13, 2024Updated last year
- scripts to automatically update ANNOVAR dbβ19Nov 17, 2021Updated 4 years ago
- Pipeline for structural variant image curation and analysis.β49Dec 5, 2021Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer β’ AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- cnv-seq with custom bugfixβ10Mar 23, 2013Updated 13 years ago
- iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.β135Updated this week
- Detect interesting SARS-CoV-2 spike protein variants from Sanger sequencing data.β11Apr 15, 2022Updated 4 years ago
- A fork of the project Excavator2 from sourceforge.β10Jun 29, 2017Updated 8 years ago
- classification of higher-order structural variants from breakpoint dataβ11Jan 8, 2018Updated 8 years ago
- SortMeRNA: next-generation sequence filtering and alignment toolβ293Jun 3, 2026Updated last week
- NGSEP is an integrated framework for analysis of short and long DNA high throughput sequencing reads. A complete list of functionalities β¦β58Jun 3, 2026Updated last week
- Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.β14Nov 11, 2019Updated 6 years ago
- GRIDSS: the Genomic Rearrangement IDentification Software Suiteβ284May 21, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer β’ AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Inverted Repeats Finder: a program to analyze DNA and RNA sequencesβ21Feb 21, 2025Updated last year
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS dataβ14Dec 24, 2024Updated last year
- strain-level analysis toolsβ41Oct 21, 2024Updated last year
- Bayesian haplotype-based mutation callingβ324Feb 13, 2026Updated 4 months ago
- Assemble bacterial isolate genomes from Nanopore readsβ134Jan 22, 2025Updated last year
- πΆ Genome assembly with short sequence readsβ26Jun 4, 2026Updated last week
- lumpy: a general probabilistic framework for structural variant discoveryβ342Feb 22, 2026Updated 3 months ago