goldman-gp-ebi / BOSS-RUNSLinks
Dynamic, adaptive sampling during nanopore sequencing
☆37Updated last month
Alternatives and similar repositories for BOSS-RUNS
Users that are interested in BOSS-RUNS are comparing it to the libraries listed below
Sorting:
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- WDL workflows for variant calling and assembly using ONT☆37Updated last month
- A local-haplotagging-based small and structural variant caller☆89Updated last week
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆75Updated 4 years ago
- ☆46Updated last month
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- Simple pileup-based variant caller☆93Updated 7 months ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated last year
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 3 weeks ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆43Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆115Updated this week
- Pipeline to convert a haploid assembly into diploid☆107Updated 10 months ago
- k-mer learning materials☆80Updated 9 months ago
- Error correction of ONT transcript reads☆58Updated 2 years ago
- GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/n…☆68Updated 3 years ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- ☆51Updated last month
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆100Updated this week
- ☆101Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated last month
- Plotting tools for nanopore methylation data☆94Updated 3 months ago
- SRF: Satellite Repeat Finder☆99Updated last year
- ☆32Updated last month
- Splitting of sequence reads by internal adapter sequence search☆51Updated 2 years ago
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- ☆68Updated 3 weeks ago
- MCHelper: An automatic tool to curate transposable element libraries☆45Updated 4 months ago
- perSVade: personalized Structural Variation detection☆40Updated 2 months ago