goldman-gp-ebi / BOSS-RUNSLinks
Dynamic, adaptive sampling during nanopore sequencing
☆37Updated 2 weeks ago
Alternatives and similar repositories for BOSS-RUNS
Users that are interested in BOSS-RUNS are comparing it to the libraries listed below
Sorting:
- WDL workflows for variant calling and assembly using ONT☆37Updated 3 weeks ago
- A local-haplotagging-based small and structural variant caller☆87Updated 2 weeks ago
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Hybrid error correction of long reads using colored de Bruijn graphs☆106Updated 2 months ago
- ☆50Updated last month
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago
- ☆31Updated 2 weeks ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆52Updated 3 months ago
- SRF: Satellite Repeat Finder☆98Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆120Updated 3 weeks ago
- ☆101Updated last year
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Large genome reassembly based on Hi-C data, continuation of GRAAL☆42Updated last year
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 11 months ago
- Evaluate variant calls and its combination with k-mer multiplicity☆67Updated 2 years ago
- A program for assessing the T2T genome continuity☆88Updated 3 weeks ago
- ✏️ Genome assembly polishing & SNV detection☆70Updated 3 weeks ago
- Simple pileup-based variant caller☆93Updated 6 months ago
- k-mer learning materials☆80Updated 8 months ago
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 7 months ago
- A list of software for pangenomics☆134Updated last week
- ☆66Updated last month
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated last year
- Methylation Phasing for Nanopore Sequencing☆48Updated 2 years ago
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated 4 months ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- A tool for Racon polishing of miniasm assemblies☆78Updated last month
- Annotation helper tool for the manual curation of transposable element consensus sequences☆51Updated 7 months ago
- vcfdist: Accurately benchmarking phased variant calls☆83Updated last month