Alternatives and similar repositories for Chamaeleo

Users that are interested in Chamaeleo are comparing it to the libraries listed below

• WGLab / DeepMod
  DeepMod: a deep-learning tool for genomic-scale, strand-sensitive and single-nucleotide based detection of DNA modifications
  ☆104Updated 2 years ago
• Illumina / PrimateAI-3D
  ☆71Updated last month
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆41Updated 3 years ago
• deepomicslab / GCNFrame
  This is a python package for genomics study with a GCN framework.
  ☆43Updated last year
• urmi-21 / orfipy
  Fast and flexible ORF finder
  ☆76Updated 3 years ago
• ncsa / NEAT
  NEAT (NExt-generation Analysis Toolkit) simulates next-gen sequencing reads and can learn simulation parameters from real data.
  ☆65Updated last week
• kircherlab / CADD-scripts
  CADD scripts release for offline scoring. For more information about CADD, please visit our website
  ☆89Updated last month
• crazyinter / Seq2Vec
  a novel encoding method for viral identification in metagenomics
  ☆15Updated 2 years ago
• plantcad / plantcad
  PlantCAD: cross-species modeling of plant genomes
  ☆58Updated 3 weeks ago
• liguowang / cpgtools
  Python package to analyze DNA methylation data
  ☆44Updated 2 weeks ago
• GoekeLab / m6anet
  Detection of m6A from direct RNA-Seq data
  ☆129Updated 7 months ago
• vagarwal87 / Xpresso
  Predicting gene expression levels from genomic sequences
  ☆55Updated 5 years ago
• novoalab / EpiNano
  Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
  ☆117Updated 5 months ago
• tao-bioinfo / PrimerServer2
  PrimerServer2: a high-throughput primer design and specificity-checking platform
  ☆80Updated 3 years ago
• zichner / primerDesign
  A tool to design highly specific PCR primers for the validation of genomic alterations including structural variants
  ☆47Updated 8 years ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 8 months ago
• liyu95 / DeepSimulator
  The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.
  ☆124Updated 5 years ago
• biodlab / RODAN
  A fully convolutional architecture for basecalling nanopore RNA sequencing data
  ☆11Updated last year
• liqingwen98 / BaseNet
  BaseNet: A Transformer-Based Toolkit for Nanopore Sequencing Signal Decoding
  ☆13Updated 3 months ago
• apcamargo / RNAsamba
  A tool for computing the coding potential of RNA transcript sequences using deep learning classification model
  ☆56Updated 3 years ago
• PacificBiosciences / ccs
  CCS: Generate Highly Accurate Single-Molecule Consensus Reads (HiFi Reads)
  ☆125Updated last year
• pinellolab / CRISPRitz
  Tool package to perform in-silico CRISPR analysis and assessment
  ☆34Updated last month
• dohlee / metheor
  Ultrafast DNA methylation heterogeneity calculation from bisulfite alignments (Lee et al., PLOS Computational Biology. 2023)
  ☆48Updated 3 months ago
• snugel / cas-offinder
  An ultrafast and versatile algorithm that searches for potential off-target sites of CRISPR/Cas-derived RNA-guided endonucleases.
  ☆95Updated 3 years ago
• aggreen / MTB-CNN
  CNN models for antibiotic resistance prediction in M. tuberculosis genomes. From Green & Yoon et al (forthcoming)
  ☆27Updated 2 years ago
• haotianteng / Xron
  Xron - an omni basecaller for ONT reads.
  ☆22Updated last year
• zhangtaolab / Plant_DNA_LLMs
  PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes
  ☆45Updated 6 months ago
• HKU-BAL / ClairS
  ClairS - a deep-learning method for long-read somatic small variant calling
  ☆102Updated 3 weeks ago
• sihaohuanguc / NanoSPA
  ☆14Updated 2 years ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆16Updated 5 years ago