Java Image Processing Pipeline (JIPipe) is a graphical batch processing language for the ImageJ ecosystem
☆17May 27, 2025Updated last year
Alternatives and similar repositories for jipipe
Users that are interested in jipipe are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [OBSOLETE] A collection of plugins related to the cell/nucleus tracking, motivated by the Cell Tracking Challenge.☆10Jan 11, 2022Updated 4 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆25Nov 25, 2025Updated 8 months ago
- Dimensionality reduction (UMAP, t-SNE, PCA) for ImageJ/Fiji☆12May 6, 2025Updated last year
- A stable diffusion demo for napari☆11Jun 7, 2026Updated last month
- Data and code required to reach the main conclusions of the fastsmcg paper☆11Sep 19, 2023Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Whole slide image registration through wsireg in napari.☆12Apr 21, 2023Updated 3 years ago
- ☆11Feb 4, 2025Updated last year
- ☆14Jul 5, 2022Updated 4 years ago
- ☆12Apr 28, 2026Updated 3 months ago
- A collection of Python Jupyter Notebooks with Generative Artificial Intelligence related contents☆17Jul 10, 2026Updated 2 weeks ago
- 智慧家庭相關日記☆21Dec 31, 2025Updated 6 months ago
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆22Updated this week
- A collection of resources on bioimage analysis and related tools and techniques☆14Apr 28, 2023Updated 3 years ago
- Genomics 3D Visualizer☆14Jun 14, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Github Gists from the command line. On MAC OSX, it (will be) an Alfred Workflow!☆11Dec 20, 2020Updated 5 years ago
- SciCount is tool focused on counting and classifying of objects in image-like data and scientific images, with training and example datas…☆11Oct 24, 2023Updated 2 years ago
- The Database Infrastructure for Mass Spectrometry (DIMSpec) project☆27Jun 27, 2025Updated last year
- R tool to analyse and integrate multiple -omics data☆16Jan 4, 2026Updated 6 months ago
- Stuff for the xiaomi yi 4k (and 4k+) cameras.☆14Jul 19, 2018Updated 8 years ago
- 🤖 MetaboT 🍵 is an AI system that accelerates mass spectrometry-(MS) based metabolomics knowledge graph mining☆30May 7, 2026Updated 2 months ago
- ☆17Jul 8, 2024Updated 2 years ago
- PCaDB - a comprehensive and interactive database for transcriptomes from prostate cancer population cohorts☆10Dec 29, 2021Updated 4 years ago
- Framework for image and flow cytometry analysis☆33Mar 17, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆59Jun 30, 2025Updated last year
- ☆24Sep 13, 2025Updated 10 months ago
- The ImageJ plugin to run deep-learning models☆98Jul 8, 2026Updated 3 weeks ago
- Use batch balanced KNN (BBKNN) in R☆14Sep 9, 2025Updated 10 months ago
- TASC aids the harmonisation of aspects of GA4GH's various products that would otherwise prevent different products from being used togeth…☆12Jul 9, 2026Updated 2 weeks ago
- Repo for the CZI Imaging Team's napari plugin Alfa Cohort collaboration☆11May 14, 2021Updated 5 years ago
- Beacon v2 Reference Implementation (API)☆17Dec 13, 2024Updated last year
- A minimal gene set characterizes multiple classes of tumor-specific TIL among different cancer types☆11Mar 4, 2025Updated last year
- A JupyterBook site for napari workshop materials☆10Jul 11, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- imageC / EVAnalyzer2 - High throughput biological image processor☆10Jun 28, 2026Updated last month
- Prototype implementation of napari-integrated CNN training viewer☆14Dec 27, 2024Updated last year
- Guides and code for 3D nuclear instance segmentation☆23Dec 2, 2025Updated 7 months ago
- Annotation of filaments and other curvilinear structures in 3D.☆12Oct 9, 2023Updated 2 years ago
- Supplementary information for "Population-level comparisons of gene regulatory networks modeled on high-throughput single-cell transcript…☆11Jan 15, 2024Updated 2 years ago
- A plugin to visualise 3D spatial single cell omics☆20Oct 22, 2025Updated 9 months ago
- High-Resolution, Large Field-of-View, and Multi-ViewSingle Objective Light-Sheet Microscopy☆33Sep 14, 2024Updated last year