Alternatives and similar repositories for Detect-seq

Users that are interested in Detect-seq are comparing it to the libraries listed below

• canceromics / MeRIPseqPipe
  MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  ☆41Updated last year
• CraigIDent / SpliSER
  Bioinformatic tool for Splice site Strength Estimation using RNA-seq
  ☆17Updated 2 weeks ago
• rnakato / DROMPAplus
  ChIP-seq pipeline tool for quality check, normalization, statistical analysis, and visualization of multiple ChIP-seq samples.
  ☆24Updated last month
• JiaqiLiZju / Nvwa
  ☆35Updated 2 years ago
• OlgaVT / Alternative-Splicing-Tools
  A list of alternative splicing analysis resources
  ☆45Updated 4 months ago
• bioinfo-biols / CIRIquant
  circular RNA quantification tools
  ☆31Updated last year
• brwnj / fastq-multx
  Demultiplexes a fastq.
  ☆45Updated 4 years ago
• zhejilab / RibORF
  Identifying genome-wide translated open reading frames using ribosome profiling
  ☆23Updated 2 years ago
• ygidtu / trackplot
  trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…
  ☆93Updated 2 months ago
• BioinfoUNIBA / REDItools2
  ☆58Updated 3 weeks ago
• zhpn1024 / ribotish
  Ribo-seq TIS Hunter, predicting translation initiation sites and ORFs using riboseq data
  ☆43Updated 8 months ago
• YangLab / CLEAR
  direct comparison of circular and linear RNA expression
  ☆23Updated 4 years ago
• TRON-Bioinformatics / EasyFuse
  EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.
  ☆60Updated 7 months ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• jfjlaros / demultiplex
  Versatile FASTA/FASTQ demultiplexer.
  ☆33Updated last year
• sjroth / ARTDeco
  ☆20Updated last year
• smithlabcode / ribotricer
  A tool for accurately detecting actively translating ORFs from Ribo-seq data
  ☆39Updated 6 months ago
• jianhong / trackViewer.documentation
  documentation for trackViewer
  ☆29Updated 6 years ago
• andrewrech / antigen.garnish
  ☆48Updated 3 years ago
• aidenlab / straw
  Extract data quickly from Juicebox via straw
  ☆69Updated 4 months ago
• zhangwei2015 / IMonitor
  This script use to analyze the immune repertoire sequenced by high throughtput sequencing
  ☆25Updated 3 years ago
• xiaofengsong / IRESfinder
  IRESfinder is a python package for the identification of RNA internal ribosome entry site in eukaryotic cell
  ☆19Updated 3 years ago
• hsinyenwu / RiboPlotR
  RiboPlotR package for Ribo-plot
  ☆15Updated last month
• XSLiuLab / Seq2Neo
  Seq2Neo: a comprehensive pipeline for cancer neoantigen immunogenicity prediction
  ☆21Updated 2 years ago
• cyang235 / LncADeep
  LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning
  ☆27Updated 7 years ago
• djhn75 / RNAEditor
  ☆15Updated 2 years ago
• GuanLab / Anchor
  This is the package of Yuanfang's winning algorithm in the ENCODE-DREAM in vivo Transcription Factor Binding Site Prediction Challenge
  ☆20Updated 5 years ago
• Xinglab / CLAM
  CLIP-seq Analysis of Multi-mapped reads
  ☆31Updated 4 years ago
• atc3 / maxquant_linux_guide
  A guide to running MaxQuant in Linux
  ☆33Updated 5 years ago
• LabTranslationalArchitectomics / riboWaltz
  optimization of ribosome P-site positioning in ribosome profiling data
  ☆52Updated 5 months ago