Sequence to Medical Phenotypes: A pipeline featuring variant annotation, prioritization, pharmacogenomics, and tools for analyzing genomic trios (mother, father, child).
☆13Mar 1, 2016Updated 10 years ago
Alternatives and similar repositories for stmp
Users that are interested in stmp are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is a R package for alignment of DIA mass-spec data☆12Jan 31, 2026Updated 9 months ago
- Ethnicity Annotation from Whole-Exome and Targeted Sequencing Data☆20Mar 18, 2023Updated 3 years ago
- Allele frequency filter app☆15May 4, 2022Updated 4 years ago
- Python-based Illumina methylation array quality control software.☆10Jul 20, 2023Updated 3 years ago
- ActiveDriverDB☆12May 1, 2023Updated 3 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- phy-mer☆11Oct 12, 2017Updated 9 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 6 years ago
- Supporting code and materials for GATK gCNV publication☆12Jul 13, 2022Updated 4 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆19Dec 28, 2022Updated 3 years ago
- Adaptive haplotype assembly for efficiently leveraging high coverage in long reads☆13Sep 4, 2018Updated 8 years ago
- Code used to generate manuscript figures and results.☆14Jan 10, 2024Updated 2 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Dockerised and simplified version of SeqWare-CGP-SomaticCore☆14Mar 5, 2021Updated 5 years ago
- ☆28Oct 5, 2018Updated 8 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A small repo for storing the code for making the files and html for CCRs.☆22Oct 22, 2019Updated 7 years ago
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆17Jan 19, 2018Updated 8 years ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 10 years ago
- Implementations of compression schemes for numeric data from mass spectrometers.☆14Mar 3, 2021Updated 5 years ago
- Kourami: Graph-guided assembly for HLA alleles☆42May 21, 2019Updated 7 years ago
- ☆16Jul 9, 2026Updated 3 months ago
- Liftover VCF files☆19Dec 10, 2016Updated 9 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Oct 23, 2026Updated last week
- annotate a VCF with other VCFs/BEDs/tabixed files☆404Jun 16, 2026Updated 4 months ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Variant quality checking scripts.☆12Feb 4, 2016Updated 10 years ago
- 💊🧬 PharMe - Pharmaceutical insights tailored to your personal genome☆23Aug 20, 2025Updated last year
- quick qc on long-read alignment files. Show read-length and depth distributions☆23Apr 24, 2026Updated 6 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆126May 4, 2026Updated 5 months ago
- VarGen is an R package designed to get a list of variants related to a disease. It just need an OMIM morbid ID as input and optionally a…☆18Jan 28, 2024Updated 2 years ago
- An Open Platform for Harmonisation & Analysis of Sequencing & Phenotype Data☆32Jul 6, 2022Updated 4 years ago
- Simple script to generate whole-genome coverage plots☆19Jun 23, 2015Updated 11 years ago
- Benchmark empirical datasets for phylogenetic method development☆20Dec 5, 2023Updated 2 years ago
- ☆10Oct 18, 2021Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Methods to integrate data from multiple genome sequencing datasets and form consensus variant calls☆46Jan 26, 2022Updated 4 years ago
- NGS perl modules☆10Oct 27, 2026Updated last week
- Command line tools for CMDB varaints browser☆23May 14, 2024Updated 2 years ago
- A series of tools and pipelines for genotyping MHC / HLA genes and alleles using SMRT Sequencing☆22Aug 29, 2016Updated 10 years ago
- Michigan Imputation Server: A new web-based service for imputation that facilitates access to new reference panels and greatly improves u…☆87Sep 28, 2024Updated 2 years ago
- Rebuilding QUILTS in Python.☆10Jul 14, 2024Updated 2 years ago
- ☆10Sep 4, 2026Updated 2 months ago