Chanjo provides a better way to analyze coverage data in clinical sequencing.
☆50Feb 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for chanjo
Users that are interested in chanjo are comparing it to the libraries listed below
Sorting:
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Feb 20, 2021Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Dec 10, 2024Updated last year
- VCF visualization interface☆177Updated this week
- Genevieve client: using GenNotes, report ClinVar for individual genomes & add consensus notes☆10Aug 2, 2016Updated 9 years ago
- Variant Annotation, Segregation and Exclusion for family or cohort based rare-disease sequencing studies.☆12Jun 2, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Machine learning use cases for teaching☆13Jul 12, 2017Updated 8 years ago
- Annotate models of genetic inheritance patterns in variant files (vcf files)☆86Jan 5, 2026Updated last month
- Mutation Identification Pipeline. Read the latest documentation:☆47Nov 18, 2025Updated 3 months ago
- ☆19Updated this week
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated last year
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Mar 3, 2017Updated 9 years ago
- annotate a VCF with other VCFs/BEDs/tabixed files☆398Aug 30, 2025Updated 6 months ago
- Pipeline for structural variant image curation and analysis.☆49Dec 5, 2021Updated 4 years ago
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆68Jun 3, 2020Updated 5 years ago
- An Artificial Neural Network-based discriminator for validating clinically significant genomic variants☆35Dec 25, 2023Updated 2 years ago
- Personal Cancer Genome Reporter (PCGR)☆274Oct 7, 2025Updated 4 months ago
- A light-weight HTML lab notebook generator☆18Jun 16, 2023Updated 2 years ago
- Color DNA/RNA bases in terminal output☆21Aug 29, 2017Updated 8 years ago
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆39Dec 15, 2025Updated 2 months ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Apr 9, 2019Updated 6 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Jan 28, 2026Updated last month
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Mar 10, 2021Updated 4 years ago
- web-based analysis tool for rare disease genomics☆200Updated this week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Oct 30, 2023Updated 2 years ago
- VariantGrid public repo☆24Feb 24, 2026Updated last week
- Provides access to complex Bioinformatics software (even BioLinux!) in just one command.☆75Jun 28, 2017Updated 8 years ago
- Bioinformatics Training Platform (BTP) Workshop: Introduction to NGS☆10Oct 31, 2018Updated 7 years ago
- LAAVA: Long-read AAV Analysis☆13Dec 9, 2025Updated 2 months ago
- a lightweight db framework for exploring genetic variation.☆326Apr 28, 2020Updated 5 years ago
- cython + htslib == fast VCF and BCF processing☆429Feb 23, 2026Updated last week
- structural variant database software☆47Feb 16, 2026Updated 2 weeks ago
- A Framework to call Structural Variants from NGS based datasets☆22Jan 22, 2018Updated 8 years ago
- A software suite for Probe Design and Proximity Detection for targeted chromosome conformation capture applications☆12Feb 4, 2026Updated last month
- The Exome Coverage and Identification Report displays the coverage of every target region in your capture design. It also displays regio…☆14Apr 22, 2015Updated 10 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- Python Programming for Biologists☆12Dec 3, 2025Updated 3 months ago
- Expedite large-scale identification of CNVs within predefined genomic regions. Online app available for those with GP2 Tier 2 Access.☆12Jun 13, 2025Updated 8 months ago