Clinical-Genomics / chanjoLinks
Chanjo provides a better way to analyze coverage data in clinical sequencing.
☆51Updated 7 months ago
Alternatives and similar repositories for chanjo
Users that are interested in chanjo are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 7 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- a pileup library that embraces the huge☆43Updated 4 years ago
- Tools for next-generation sequencing analysis☆88Updated 6 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 11 months ago
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Updated 9 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆45Updated last year
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆57Updated 3 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆56Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Tools for analyzing 10X Genomics data☆42Updated 6 years ago
- sort genomic data☆35Updated 5 years ago