Clinical-Genomics / chanjoLinks
Chanjo provides a better way to analyze coverage data in clinical sequencing.
☆50Updated 5 months ago
Alternatives and similar repositories for chanjo
Users that are interested in chanjo are comparing it to the libraries listed below
Sorting:
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Variant caller GUI + genetic disease analysis☆22Updated 5 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Browser based application for viewing bam alignments☆56Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- An awk-like VCF parser☆56Updated last year
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Graphite - Graph-based variant adjudication☆28Updated 4 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 3 weeks ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Tools for bam file processing☆55Updated 10 years ago
- SV detection from paired end reads mapping☆38Updated 14 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Call regions of homozygosity and make tentative UPD calls☆11Updated 6 months ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 5 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 4 years ago