☆10Mar 6, 2025Updated last year
Alternatives and similar repositories for CRISPRtracrRNA
Users that are interested in CRISPRtracrRNA are comparing it to the libraries listed below
Sorting:
- Protein language models-assisted optimization of a uracil-N-glycosylase variant enables programmable T-to-G and T-to-C base editing☆18Jun 6, 2024Updated last year
- A python implementation of the Burrows Wheeler Alignment for DNA sequence matching☆15Aug 23, 2018Updated 7 years ago
- Python based Graphical User Interface for generating input files for and running molecular dynamic simulation.☆10Aug 27, 2024Updated last year
- Fast python code to merge paired-end reads☆13Oct 29, 2021Updated 4 years ago
- R wrapper around the Chipmunk2d physics simulation library☆28Sep 8, 2020Updated 5 years ago
- Predicting high-fitness mutations based on protein inverse folding models☆75Sep 30, 2025Updated 5 months ago
- ☆17Sep 4, 2024Updated last year
- CRISPR Indel, base edit analysis☆11Aug 1, 2020Updated 5 years ago
- Data Processing, Modeling and Analysis scripts for CRISPR-inDelphi☆14Apr 21, 2023Updated 2 years ago
- A step-by-step tutorial to run Molecular Dynamics Simulations with enhanced sampling of a pepitide using PLUMED implemented in GROMACS to…☆15Mar 4, 2024Updated 2 years ago
- Source codes and examples for DeepPrime☆13Dec 17, 2024Updated last year
- GCsnap: interactive snapshots for the comparison of protein-coding genomic contexts☆36Apr 16, 2024Updated last year
- Affine gap sequence alignment in Python.☆15May 17, 2014Updated 11 years ago
- Implementation of Needleman-Wunsch, Smith-Waterman, Hirschberg and affine bioinformatics algorithms for alighning biological sequences☆12Dec 7, 2019Updated 6 years ago
- Variant-aware CRISPR off-target nomination☆24Jan 26, 2026Updated last month
- Modelling insertion efficiency for Prime Insertion Experiments☆13Apr 1, 2024Updated last year
- Mining CRISPRs in Environmental Datasets☆120Feb 10, 2023Updated 3 years ago
- DataViz protocols book for wet lab scientists☆17Dec 10, 2025Updated 3 months ago
- Analysis of deep sequencing data for rapid and intuitive interpretation of genome editing experiments☆333Mar 13, 2026Updated last week
- ☆23Jul 14, 2023Updated 2 years ago
- Python library for genome editing, CRISPR gRNA design and prediction☆21Dec 2, 2025Updated 3 months ago
- Format Matplotlib scientific plots☆19Feb 5, 2022Updated 4 years ago
- The new source code of the LinearFold, linear-time prediction for RNA secondary structures☆189Apr 4, 2024Updated last year
- Implementation of BLAST(Basic Local Alignment Search Tool) algorithm in Python 3.5 using Numpy.☆22Apr 14, 2018Updated 7 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆31Feb 17, 2023Updated 3 years ago
- ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective☆67Jan 29, 2026Updated last month
- Install latest version of Aspera Connect and show example how to use it for downloading sequening data.☆19Apr 28, 2020Updated 5 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- MXfold2: RNA secondary structure prediction using deep learning with thermodynamic integration☆160Mar 9, 2026Updated 2 weeks ago
- A Similarity-Guided Alignment Algorithm☆28Feb 7, 2026Updated last month
- Pipeline for Nanopore sequencing: demultiplexing, variant calling, and quality visualization with error handling.☆11Jan 25, 2026Updated last month
- Hybrid method based on a variable-order de bruijn Graph for the error Correction of Long Reads☆11Jan 20, 2021Updated 5 years ago
- A Python Shiny project with Joachim Goedhart☆20Jun 30, 2024Updated last year
- Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)☆32Feb 22, 2018Updated 8 years ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆151Updated this week
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 8 months ago
- Applied Probabilistic Programming & Bayesian Machine Learning (MIT IAP 2017)☆33Feb 8, 2017Updated 9 years ago
- Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and…☆20Aug 4, 2022Updated 3 years ago
- heterogeneous BLAST (H-BLAST), a fast parallel search tool for a heterogeneous computer that couples CPUs and GPUs, to accelerate BLASTX…☆12Jun 20, 2018Updated 7 years ago