griffithlab / civic-serverLinks
Backend Server for CIViC Project
☆39Updated 2 years ago
Alternatives and similar repositories for civic-server
Users that are interested in civic-server are comparing it to the libraries listed below
Sorting:
- Web client for CIViC: Clinical Interpretations of Variants in Cancer☆50Updated 2 years ago
- ☆29Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆25Updated 9 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Updated 9 years ago
- Convert CWL to WDL☆17Updated 9 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- MyVariant.info: A BioThings API for human variant annotations☆98Updated 4 months ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆50Updated 2 months ago
- create a gemini-compatible database from a VCF☆55Updated 5 years ago
- full taxonomer cython repository☆22Updated 6 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 4 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 8 years ago
- High-definition reconstruction of clonal composition from next-generation sequencing data☆42Updated 9 years ago
- Stupid Simple Structural Variant View☆25Updated 9 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants☆19Updated 7 years ago
- Annotation of VCF variants with functional impact and from databases (executable+library)☆64Updated last week
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆30Updated 4 years ago
- Tools for bam file processing☆55Updated 10 years ago
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- A Perl extension and collection of utilities for Next-Generation Sequencing (NGS) data analysis☆23Updated 3 months ago
- ☆22Updated 2 years ago