Alternatives and similar repositories for civic-server

Users that are interested in civic-server are comparing it to the libraries listed below

• griffithlab / civic-client
  Web client for CIViC: Clinical Interpretations of Variants in Cancer
  ☆50Updated last year
• sbg / smart-variant-filtering
  ☆29Updated 4 years ago
• quinlan-lab / ccrhtml
  A small repo for storing the code for making the files and html for CCRs.
  ☆22Updated 5 years ago
• rgcgithub / clamms
  CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.
  ☆29Updated 4 years ago
• eilbecklab / clinvar-miner
  Website to analyze conflicting assertions in ClinVar
  ☆18Updated last year
• robinandeer / puzzle
  Variant caller GUI + genetic disease analysis
  ☆22Updated 5 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• macarthur-lab / gnomad_browser
  gnomAD browser pre-ASHG 2018
  ☆33Updated 4 years ago
• PGDX / cerebro-paper
  ☆23Updated 6 years ago
• Yandell-Lab / VVP-pub
  VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
  ☆19Updated 7 years ago
• quinlan-lab / pathoscore
  pathoscore evaluates variant pathogenicity tools and scores.
  ☆21Updated 3 years ago
• bio-ontology-research-group / phenomenet-vp
  A phenotype-based tool for variant prioritization in WES and WGS data
  ☆38Updated 2 years ago
• deweylab / MetaSRA-pipeline
  MetaSRA: normalized sample-specific metadata for the Sequence Read Archive
  ☆43Updated this week
• jtaghiyar / kronos
  A workflow assembler for cancer genome analytics and informatics
  ☆19Updated 8 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆56Updated 4 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• moonso / vcf_parser
  Simple vcf parser, based on PyVCF
  ☆46Updated 6 years ago
• sanjanalab / GUIDES
  A new workflow for the custom design of CRISPR libraries.
  ☆21Updated 2 years ago
• gersteinlab / aloft
  ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…
  ☆19Updated 5 years ago
• InscriptaLabs / BioCantor
  ☆22Updated last year
• genomics-dev / wecall
  Fast, accurate and simple to use command line tool for variant detection in NGS data.
  ☆12Updated 5 years ago
• Clinical-Genomics / genmod
  Annotate models of genetic inheritance patterns in variant files (vcf files)
  ☆80Updated 2 weeks ago
• TheJacksonLaboratory / LIRICAL
  LIkelihood Ratio Interpretation of Clinical AbnormaLities
  ☆29Updated last month
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated 7 months ago
• TheJacksonLaboratory / CloudNeo
  CWL implementation of CloudNeo: A cloud pipeline for identifying patient-specific tumor neoantigens
  ☆19Updated 6 years ago
• monarch-initiative / Squirls
  Interpretable prioritization of splice variants in diagnostic next-generation sequencing
  ☆17Updated last year
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆51Updated 7 months ago
• bioinform / breakseq2
  BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants
  ☆24Updated 9 years ago
• bioinformed / vgraph
  vgraph is a command line application and Python library to compare genetic variants using variant graphs. ``vgraph`` utilizes a graph re…
  ☆43Updated 3 years ago
• aryeelab / umi
  Preprocessing tools for unique molecular index (UMI) sequencing reads
  ☆31Updated 2 years ago