barricklab / breseqLinks
breseq is a computational pipeline for finding mutations relative to a reference sequence using high-throughput DNA resequencing data. It is intended for haploid microbial genomes (<20 Mb). breseq is a command line tool implemented in C++ and R.
☆173Updated last month
Alternatives and similar repositories for breseq
Users that are interested in breseq are comparing it to the libraries listed below
Sorting:
- Bacterial ribosomal RNA predictor☆266Updated this week
- Download files from NCBI Entrez by accession☆132Updated last year
- A tool for automated alignment trimming in large-scale phylogenetic analyses. Development version: 2.0☆242Updated this week
- A user-friendly workflow for phylogenomics☆224Updated 2 weeks ago
- Processing pipeline for pan-genome visulization and exploration☆142Updated 2 years ago
- A tool to circularize genome assemblies☆249Updated last year
- ultrafast taxonomic profiling and genome querying for metagenomic samples by abundance-corrected minhash.☆268Updated 2 months ago
- Pipeline for metabolic annotation of microbial genomes☆150Updated 9 months ago
- Convert various sequence formats to FASTA☆140Updated last week
- HyPhy: Hypothesis testing using Phylogenies☆247Updated this week
- Precise phylogenetic analysis of microbial isolates and genomes from metagenomes☆159Updated 6 months ago
- Pan-genome wide association studies☆205Updated last year
- snipit: summarise snps relative to your reference sequence☆164Updated 3 months ago
- Application and Python module for average nucleotide identity analyses of microbes.☆218Updated 5 months ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆338Updated 3 months ago
- Run_dbcan V4, using genomes/metagenomes/proteomes of any assembled organisms (prokaryotes, fungi, plants, animals, viruses) to search for…☆155Updated 8 months ago
- CAMISIM: Simulating metagenomes and microbial communities☆220Updated last week
- CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metage…☆224Updated 2 months ago
- An updated pipeline for pangenome investigation☆334Updated 9 months ago
- Tool to plot synteny and structural rearrangements between genomes☆335Updated 8 months ago
- Classifier for metagenomic sequences☆269Updated 6 months ago
- FunGAP: fungal Genome Annotation Pipeline☆111Updated 6 months ago
- BSR-Based Allele Calling Algorithm☆147Updated last week
- A robust, extensible metagenomics pipeline☆174Updated last week
- ☆223Updated 3 weeks ago
- Rapid comparison and dereplication of genomes☆324Updated last month
- motus - a tool for marker gene-based OTU (mOTU) profiling☆166Updated 2 weeks ago
- Build a partitioned pangenome graph from microbial genomes☆290Updated last week
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆208Updated last year
- PAML is a package of programs for phylogenetic analyses of DNA or protein sequences using maximum likelihood. Please report only **techni…☆179Updated 2 weeks ago