alastair-droop / fqtoolsLinks
An efficient FASTQ manipulation suite
☆138Updated 5 years ago
Alternatives and similar repositories for fqtools
Users that are interested in fqtools are comparing it to the libraries listed below
Sorting:
- ☆123Updated 2 months ago
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆113Updated this week
- ☆95Updated 3 years ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆145Updated 9 years ago
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved …☆56Updated 5 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- igv.js standalone page generator and automatic configuration to view bam/cram/vcf/bed. "working in under 1 minute"☆129Updated 2 weeks ago
- Match up paired end fastq files quickly and efficiently.☆152Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Whole Genome Simulator for Next-Generation Sequencing☆101Updated 10 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 10 months ago
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆125Updated 6 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- A tool set for short variant discovery in genetic sequence data.☆202Updated 4 years ago
- VCF-kit: Assorted utilities for the variant call format☆130Updated 3 months ago
- ABRA2☆93Updated 2 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- a signal-level demultiplexer for Oxford Nanopore reads☆126Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 11 months ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 weeks ago
- Script to automatically create and run IGV snapshot batchscripts☆143Updated 2 years ago
- Software for clustering de novo assembled transcripts and counting overlapping reads☆74Updated 3 years ago
- NEAT read simulation tools☆101Updated 3 years ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 4 years ago
- SV detection from paired end reads mapping☆117Updated 6 years ago
- Small utilities for working with fastq sequence files.☆123Updated 3 years ago