alastair-droop / fqtools
An efficient FASTQ manipulation suite
☆138Updated 5 years ago
Alternatives and similar repositories for fqtools:
Users that are interested in fqtools are comparing it to the libraries listed below
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆156Updated last year
- Julia package powering VIVA, our tool for visualization of genomic variation data. Manual:☆86Updated last year
- ☆120Updated 3 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆212Updated 7 months ago
- VarDict☆194Updated last year
- ☆94Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆109Updated 2 months ago
- Tool for stripping adaptors and/or merging paired reads with overlap into single reads.☆142Updated 8 years ago
- ABRA2☆92Updated 2 years ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆54Updated 2 years ago
- Relevant papers for CNV and SV approaches☆94Updated 3 months ago
- Pipeline for calling structural variations in whole genomes sequencing Oxford Nanopore data☆114Updated 3 years ago
- BAM Statistics, Feature Counting and Annotation☆146Updated 2 weeks ago
- SV detection from paired end reads mapping☆117Updated 5 years ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆141Updated last year
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆204Updated this week
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆110Updated this week
- Script to automatically create and run IGV snapshot batchscripts☆140Updated 2 years ago
- Control-FREEC: Copy number and genotype annotation in whole genome and whole exome sequencing data☆157Updated 6 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆107Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated 2 months ago
- ☆112Updated last week
- The DevNet project on github stores the PacBio DevNet website.☆116Updated 6 years ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- A flexible, scalable, and reproducible pipeline to automate variant calling from raw sequence reads, with lots of bells and whistles - fo…☆96Updated last week
- Same species annotation lift over pipeline.☆96Updated last year
- A tool set for short variant discovery in genetic sequence data.☆197Updated 3 years ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆135Updated 3 years ago
- Whole Genome Simulator for Next-Generation Sequencing☆96Updated 3 months ago