lexnederbragt / INF-BIOx121_fall2014_de_novo_assembly
☆20Updated 10 years ago
Alternatives and similar repositories for INF-BIOx121_fall2014_de_novo_assembly:
Users that are interested in INF-BIOx121_fall2014_de_novo_assembly are comparing it to the libraries listed below
- ☆17Updated 7 years ago
- Tool for visualising assemblies.☆17Updated 9 years ago
- Some simple scripts to ease management and local basecalling of millions of FAST5 files☆25Updated 7 years ago
- Hagfish - assess an assembly through creative use of coverage plots☆36Updated 12 years ago
- NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore tech…☆15Updated 8 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 5 years ago
- A comprehensive toolkit for running Oxford Nanopore's MinION☆12Updated 6 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- Error correction for Oxford Nanopore data☆47Updated 3 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 6 years ago
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 3 years ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Updated 2 years ago
- My experimental tools on top of htslib. NOT OFFICIAL!!!☆55Updated last year
- Public Health England SNP calling pipeline.☆36Updated 6 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Exploration of controlled loss of quality values for compressing CRAM files☆34Updated 2 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago
- program for haplotype phasing from sequence reads and related tools☆25Updated 6 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Updated 7 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 5 years ago
- Annotated Genome Optimization Using Transcriptome Information☆19Updated 4 years ago
- Code for nanopore paper☆33Updated 9 years ago
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago