mbhall88 / taeperLinks
A small python program to simulate a real-time Nanopore sequencing run based on a previous experiment.
☆19Updated 7 years ago
Alternatives and similar repositories for taeper
Users that are interested in taeper are comparing it to the libraries listed below
Sorting:
- Scripts for implementing read until and other examples.☆31Updated 5 years ago
- Subset of fast5 files contained in a fastq, BAM, or SAM file.☆12Updated 2 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Metagenomic profiling and phylogenetic distances via common kmers☆42Updated 4 years ago
- A resistome profiler for Graphing Resistance Out Of meTagenomes☆66Updated 5 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated last month
- Estimating k-mer coverage histogram of genomics data☆77Updated last year
- Tools and software library developed by the ONT Applications group☆63Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Adapter trimming and virtual library creation for Illumina Nextera Mate Pair libraries.☆54Updated 7 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 9 months ago
- Python bindings for Bifrost's compacted colored de Bruijn Graph with a NetworkX-compatible API☆28Updated last year
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Edinburgh Genomics MinION training 2016☆33Updated 8 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆48Updated 4 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Classify sequencing reads using MinHash.☆48Updated 5 years ago
- Dot: An interactive dot plot viewer for comparative genomics☆7Updated 5 years ago
- Analysis tool for Nanopore sequencing data☆33Updated 6 years ago
- Amplicon Sequencing Analysis Pipeline☆17Updated 3 weeks ago
- 10x Genomics Reads Simulator☆45Updated last year
- A versatile toolkit for k-mers with taxonomic information☆81Updated last year
- ☆49Updated 9 months ago
- High-performance error correction for Illumina resequencing data☆72Updated 9 years ago
- Standalone C library for assembling Illumina short reads in small regions☆72Updated 2 years ago
- Reference-free variant discovery in large eukaryotic genomes☆41Updated 4 years ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago