A fast and accurate RNA secondary structure, end-to-end approach prediction method.
☆13Jan 2, 2025Updated last year
Alternatives and similar repositories for sincFold
Users that are interested in sincFold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆14Sep 19, 2026Updated last month
- Differentiable RNA folding in JAX☆31Mar 25, 2025Updated last year
- Evolcust retrieves groups of genes that appear clustered together in groups of species☆16Oct 21, 2022Updated 4 years ago
- ☆22Dec 20, 2024Updated last year
- RNA Secondary Structure Prediction☆11Oct 26, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- bpRNA: Large-scale Annotation and Analysis of RNA Secondary Structure☆52Nov 23, 2023Updated 2 years ago
- RNA Structural Covariation Above Phylogenetic Expectation☆25Oct 21, 2026Updated last week
- GCNfold: A novel lightweight model with valid extractors for RNA secondary structure prediction☆13Jul 23, 2023Updated 3 years ago
- Very flexible tools for plotting and analyzing all kinds of RNA structure data☆16Oct 8, 2026Updated 3 weeks ago
- Simultaneous multi-sample transcript assembler for RNA-seq data☆18Dec 13, 2024Updated last year
- ☆12Feb 13, 2019Updated 7 years ago
- A motif discovery tool to detect the occurrences of known motifs☆20Jan 21, 2021Updated 5 years ago
- xGAP is an efficient, modular, extensible and fault-tolerant pipeline for massively parallelized genomic analysis/variant discovery from …☆11Oct 21, 2020Updated 6 years ago
- Improving RNA structure prediction through multitask learning on diverse crowdsourced data.☆71Jun 16, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- interactive Multi Objective K-mer Analysis☆25Mar 5, 2023Updated 3 years ago
- Secondary structure prediction of long non-coding RNA: review and experimental comparison of existing approaches, L.A. Bugnon, A.A. Edera…☆22Mar 17, 2024Updated 2 years ago
- A de novo prediction tool of chromatin accessible regions for plant genomes☆10Aug 12, 2021Updated 5 years ago
- Detecting Archaic Introgression from Population Genetic Data with S*☆10Aug 9, 2026Updated 2 months ago
- a simple, web-based (multi-platform) mp3 player☆10Dec 11, 2018Updated 7 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Aug 24, 2022Updated 4 years ago
- PriOritizing the Candidate genes by incorporating information of Knowledge-based gene sets, Effects of variants, GWAS and TWAS☆11May 14, 2021Updated 5 years ago
- Nanopore field sequencing pipeline for untargeted (aka. metagenomics) virus sequencing☆13Jun 29, 2026Updated 4 months ago
- HInt (Homologous Interactions)☆10Oct 23, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Network Visualization using both GUI and Programming☆29Jul 3, 2026Updated 3 months ago
- indel haplotype visualization on the command line from BAM files☆12Mar 12, 2014Updated 12 years ago
- ☆27Oct 9, 2026Updated 3 weeks ago
- MTAE-based 5UTR design model☆12Jan 23, 2024Updated 2 years ago
- BPfold: Deep generalizable prediction of RNA secondary structure via base pair motif energy.☆37May 27, 2026Updated 5 months ago
- ☆11Aug 5, 2022Updated 4 years ago
- Human pan-genome analysis pipeline☆30Apr 30, 2020Updated 6 years ago
- ☆10Oct 9, 2024Updated 2 years ago
- Non-parametric structural variant genotyper☆15Nov 18, 2021Updated 4 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- LncADeep is an ab initio lncRNA identification and functional annotation tool based on deep learning☆29Jun 4, 2018Updated 8 years ago
- Annotation of cryptic transposon variants using Hidden Markov Models to detect conserved terminal features.☆10Updated this week
- Repository for the UTN BA Data Science Course 2020☆15Jun 28, 2021Updated 5 years ago
- CONTRAfold-SE - Learning RNA secondary structure (only) from structure probing data☆11Jul 11, 2024Updated 2 years ago
- ☆29Feb 23, 2026Updated 8 months ago
- A tool to infer TF regulators for gene modules.☆11May 11, 2021Updated 5 years ago
- Primera edición en español open source del libro Python for Bioinformatics.☆11Oct 2, 2021Updated 5 years ago