djimenezsanchez / NaroNet
Trained only with subject-level labels, NaroNet discovers phenotypes, neighborhoods, and areas with the highest influence when classifying subject types.
☆15Updated 10 months ago
Related projects ⓘ
Alternatives and complementary repositories for NaroNet
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆45Updated 2 weeks ago
- ☆28Updated 10 months ago
- Piecewise alignment for layers of mosaics☆20Updated this week
- Integrated pipeline for multiplexed image analysis☆75Updated this week
- Biologically-informed deep learning for cell segmentation of subcelluar spatial transcriptomics data☆35Updated 3 months ago
- version 1 scripts for CODA☆37Updated 6 months ago
- QuPath extension to interactively align images☆19Updated 2 months ago
- The AstroPath Pipeline was developed to process whole slide multiplex immunofluorescence data from microscope to database at single cell …☆18Updated last year
- QuPath extension to run StarDist nucleus detection☆34Updated last month
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated last week
- Machine learning for Analysis of Proteomics in Spatial biology - Nature Communications☆48Updated 7 months ago
- ☆22Updated 2 months ago
- ☆33Updated 7 months ago
- ☆12Updated 2 months ago
- ☆25Updated 5 months ago
- List of QuPath scripts for alignment and stain deconvolution of whole-slide histology images☆24Updated last year
- CellSNAP: Cross-domain information fusion for enhanced cell population delineation in single-cell spatial-omics data☆13Updated last month
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆64Updated last month
- A pan-cancer platform for mutation prediction from routine histology☆67Updated 3 years ago
- Scripts capable of re-creating figures from Van Valen Lab publications☆18Updated 2 years ago
- Interactive visualization of spatial omics data☆41Updated this week
- Multiple-choice microscopy pipeline☆109Updated 3 weeks ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- ☆112Updated last week
- Scripts for data processing☆41Updated 5 months ago
- Pan-cancer computational histopathology reveals mutations, tumor composition and prognosis☆74Updated 3 years ago
- Sub-cellular spatial transcriptomics Cell Segmentation☆55Updated last year
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆29Updated 6 months ago
- Technology-invariant pipeline for spatial omics analysis that scales to millions of cells (Xenium / Visium HD / MERSCOPE / CosMx / PhenoC…☆137Updated this week