labsyspharm / minerva-storyLinks
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
☆54Updated last year
Alternatives and similar repositories for minerva-story
Users that are interested in minerva-story are comparing it to the libraries listed below
Sorting:
- Histology Topography Cytometry Analysis Toolbox☆67Updated 2 years ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆61Updated 3 months ago
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated last week
- Multiple-choice microscopy pipeline☆136Updated last week
- Integrated pipeline for multiplexed image analysis☆96Updated 5 months ago
- Spatial Single-Cell Analysis Toolkit☆98Updated 2 months ago
- QuPath extension to run StarDist nucleus detection☆46Updated 2 months ago
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆38Updated last week
- ☆39Updated last year
- ☆27Updated 11 months ago
- Accessible and interoperable whole slide image analysis☆130Updated last week
- QuPath extension to interactively align images☆25Updated last month
- R package for visualization of highly multiplexed imaging data☆33Updated 3 months ago
- Helper functions for working with inForm data.☆18Updated 3 years ago
- ☆28Updated 11 months ago
- A toolkit for processing multiplexed tissue images☆63Updated last month
- Python API and Jupyter widget for Vitessce☆54Updated this week
- ☆57Updated this week
- Image Mass Cytometry analysis pipeline☆26Updated 3 months ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆24Updated 2 years ago
- ☆68Updated this week
- ☆29Updated last year
- A Python toolkit for subcellular analysis of spatial transcriptomics data☆83Updated last month
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆49Updated 3 years ago
- Interactive visualization of spatial omics data☆66Updated this week
- Framework for image and flow cytometry analysis☆28Updated last month
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆15Updated 3 years ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆55Updated 2 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆88Updated last year
- scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images☆51Updated last week