Alternatives and similar repositories for minerva-story

Users that are interested in minerva-story are comparing it to the libraries listed below

• TissUUmaps / TissUUmaps
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆59Updated 2 months ago
• SchapiroLabor / histoCAT
  Histology Topography Cytometry Analysis Toolbox
  ☆67Updated last year
• labsyspharm / mcmicro
  Multiple-choice microscopy pipeline
  ☆136Updated 2 weeks ago
• ciccalab / SIMPLI
  SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.
  ☆38Updated 2 years ago
• qupath / qupath-extension-align
  QuPath extension to interactively align images
  ☆24Updated last month
• labsyspharm / cylinter
  An Interactive Image Segmentation Filter for Multiplex Microscopy
  ☆31Updated this week
• klarman-cell-observatory / PowerAnalysisForSpatialOmics
  ☆27Updated 10 months ago
• labsyspharm / scimap
  Spatial Single-Cell Analysis Toolkit
  ☆94Updated last month
• hubmapconsortium / spatial-transcriptomics-pipeline
  ☆29Updated last year
• angelolab / ark-analysis
  Integrated pipeline for multiplexed image analysis
  ☆93Updated 4 months ago
• HiDiHlabs / ssam
  ☆27Updated 10 months ago
• camlab-bioml / astir
  astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨
  ☆53Updated last month
• BodenmillerGroup / cytomapper
  R package for visualization of highly multiplexed imaging data
  ☆33Updated 2 months ago
• ElementoLab / utag
  ☆38Updated last year
• TissUUmaps / TissUUmapsCore
  TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…
  ☆23Updated 2 years ago
• rendeirolab / LazySlide
  Accessible and interoperable whole slide image analysis
  ☆124Updated this week
• Nanostring-Biostats / SpatialOmicsOverlay
  Tools for analyzing data on the image from NanoString GeoMx Digital Spatial Profiler (DSP).
  ☆21Updated 2 weeks ago
• Mr-Milk / SpatialTis
  Spatial analysis toolkit for single cell multiplexed tissue data
  ☆30Updated 11 months ago
• akoyabio / phenoptr
  Helper functions for working with inForm data.
  ☆18Updated 3 years ago
• vitessce / vitessce-python
  Python API and Jupyter widget for Vitessce
  ☆50Updated last week
• qupath / qupath-extension-stardist
  QuPath extension to run StarDist nucleus detection
  ☆43Updated last month
• BodenmillerGroup / steinbock
  A toolkit for processing multiplexed tissue images
  ☆62Updated last week
• nolanlab / CODEX
  Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation
  ☆48Updated 3 years ago
• scverse / spatialdata-io
  ☆66Updated this week
• scverse / spatialdata-notebooks
  ☆54Updated last week
• nolanlab / SpatialScore
  R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…
  ☆15Updated 3 years ago
• rendeirolab / wsidata
  Efficient data structures and IO for whole slide image analysis
  ☆15Updated last week
• YeoLab / bento-tools
  A Python toolkit for subcellular analysis of spatial transcriptomics data
  ☆81Updated 2 weeks ago
• plevritis-lab / CELESTA
  Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …
  ☆36Updated last year
• JEFworks-Lab / STalign
  Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping
  ☆85Updated last year