labsyspharm / minerva-story
Minerva Story is an image viewer that is designed specifically to make it easy for non-expert users to interact with complex tissue images.
☆50Updated 6 months ago
Related projects ⓘ
Alternatives and complementary repositories for minerva-story
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆25Updated 3 weeks ago
- ☆21Updated last year
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆22Updated last year
- QuPath extension to interactively align images☆20Updated 3 months ago
- Spatial Single-Cell Analysis Toolkit☆74Updated this week
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆45Updated last month
- Python API and Jupyter widget for Vitessce☆40Updated this week
- SIMPLI is a highly configurable pipeline for the analysis of multiplexed imaging data.☆35Updated last year
- Code accompanying the manuscript "Tissue Schematics map the specialization of immune tissue motifs and their appropriation by tumors"☆10Updated last year
- Multiple-choice microscopy pipeline☆113Updated last month
- ☆17Updated 7 months ago
- ☆33Updated 7 months ago
- ☆23Updated last month
- Histology Topography Cytometry Analysis Toolbox☆66Updated last year
- ☆28Updated last month
- R script for calculating the SpatialScore as described in our manuscript: "Immune cell topography predicts response to PD-1 blockade in c…☆12Updated 3 years ago
- ☆31Updated last month
- R package for visualization of highly multiplexed imaging data☆31Updated 5 months ago
- Integrated pipeline for multiplexed image analysis☆77Updated 2 weeks ago
- Image processing software for CODEX: driftcompensation, deconvolution, uploading and segmentation☆42Updated 2 years ago
- ☆13Updated 3 months ago
- Python tool for alignment of spatial transcriptomics (ST) data using diffeomorphic metric mapping☆69Updated 11 months ago
- astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨☆50Updated 5 months ago
- Raw format to OME-TIFF converter☆49Updated last week
- Segmentation error aware clustering for multiplexed imaging☆12Updated last month
- Automate unsupervised machine learning cell type identification using both protein expressions and cell spatial neighborhood information …☆30Updated 6 months ago
- ☆38Updated 2 weeks ago
- QuST: QuPath Extension for Integrative Whole Slide Image and Spatial Transcriptomics Analysis☆10Updated last week
- ☆26Updated 2 months ago
- Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.☆26Updated last month