Alternatives and similar repositories for scope2screen:

Users that are interested in scope2screen are comparing it to the libraries listed below

• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆35Updated 6 months ago
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆13Updated 4 months ago
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆23Updated 7 months ago
• thewtex / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆27Updated 2 weeks ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆55Updated last week
• labsyspharm / minerva_analysis
  ☆26Updated last week
• fractal-analytics-platform / fractal-client
  Command-line client for Fractal
  ☆45Updated this week
• tlambert03 / napari-omero
  Browse your OMERO database from within napari.
  ☆35Updated 2 weeks ago
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆49Updated this week
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆68Updated 2 weeks ago
• fractal-napari-plugins-collection / napari-feature-classifier
  ☆22Updated 4 months ago
• BIOP / ijp-kheops
  ☆15Updated 2 weeks ago
• allen-cell-animated / agave
  ☆41Updated last week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆23Updated last month
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆40Updated 3 months ago
• RationAI / xopat
  Histopatholical visualization toolkit based on OpenSeaDragon.
  ☆23Updated this week
• BioImageTools / ome-zarr-image-analysis-nextflow
  Basic example of using OME-Zarr in a Nextflow pipeline
  ☆15Updated 2 months ago
• haesleinhuepf / napari-accelerated-pixel-and-object-classification
  GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.
  ☆43Updated last year
• haesleinhuepf / napari-segment-blobs-and-things-with-membranes
  A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…
  ☆26Updated 2 months ago
• haesleinhuepf / napari-assistant
  ☆24Updated last month
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆85Updated 2 months ago
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆36Updated 3 weeks ago
• peng-lab / BaSiCPy
  ☆68Updated last month
• stardist / stardist-napari
  StarDist plugin for napari
  ☆37Updated 5 months ago
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆61Updated last week
• fmicompbio / ez_zarr
  GIve easy, high-level access to ome-zarr fileset
  ☆13Updated 3 weeks ago
• jluethi / napari-feature-visualization
  Visualizing feature measurements on label images in napari
  ☆10Updated 6 months ago
• imjoy-team / kaibu
  Kaibu -- a progressive web app for visualizing and annotating multi-dimensional images.
  ☆32Updated 9 months ago
• Kapoorlabs-CAPED / vollseg-napari
  Napari plugin for vollseg
  ☆13Updated 8 months ago
• weigertlab / tarrow
  Time arrow prediction for live-cell microscopy
  ☆18Updated 7 months ago