labsyspharm / scope2screenLinks
Scope2Screen is an open-source web-application for focus+context exploration and annotation of whole-slide, high-plex, tissue images.
☆15Updated 2 years ago
Alternatives and similar repositories for scope2screen
Users that are interested in scope2screen are comparing it to the libraries listed below
Sorting:
- A relabeling tool for tiled segmentation with Dask☆17Updated last year
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆45Updated 7 months ago
- Multiple file format reading directly into napari using pure Python☆39Updated 2 months ago
- Browse your OMERO database from within napari.☆39Updated 2 weeks ago
- Python module utilizing libCZI for reading Zeiss CZI files.☆44Updated 8 months ago
- Histopatholical visualization toolkit based on OpenSeaDragon.☆29Updated this week
- Web Image Processing Pipeline (WIPP)☆25Updated last year
- Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.☆218Updated this week
- ☆22Updated 5 months ago
- An ImageJ/Fiji plugin designed to effortlessly integrate Segment-Anything models (SAMs) without code.☆82Updated 3 weeks ago
- Raw format to OME-TIFF converter☆56Updated 3 weeks ago
- Bio-Formats image file format to raw format converter☆102Updated 2 weeks ago
- Evaluating the quality of a cell segmentation method without reference.☆12Updated 4 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- A module with convenience functions for writing Python code that interacts with OMERO.☆46Updated 2 weeks ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆160Updated 4 months ago
- Command-line client for Fractal☆47Updated this week
- Piecewise alignment for layers of mosaics☆29Updated 3 months ago
- ☆91Updated last month
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆123Updated this week
- A napari plugin for clustering objects according to their properties.☆87Updated this week
- native Python dataclasses for the OME data model☆65Updated this week
- NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF☆35Updated 3 weeks ago
- GIve easy, high-level access to ome-zarr fileset☆22Updated 2 months ago
- Image reading, metadata management, and image writing for Microscopy images in Python☆110Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 5 months ago
- QuPath extension for Cellsparse☆19Updated 7 months ago
- Accurate and efficient spot detection for microscopy data☆113Updated 2 weeks ago
- ☆18Updated last week
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago