Alternatives and similar repositories for scope2screen

Users that are interested in scope2screen are comparing it to the libraries listed below

• RationAI / xopat
  Histopatholical visualization toolkit based on OpenSeaDragon.
  ☆29Updated last week
• TheJacksonLaboratory / dask_relabeling
  A relabeling tool for tiled segmentation with Dask
  ☆17Updated last year
• labsyspharm / ashlar
  ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration
  ☆162Updated 5 months ago
• peng-lab / BaSiCPy
  ☆91Updated 2 months ago
• AllenCellModeling / napari-aicsimageio
  Multiple file format reading directly into napari using pure Python
  ☆39Updated 3 months ago
• glencoesoftware / bioformats2raw
  Bio-Formats image file format to raw format converter
  ☆102Updated last month
• ome / napari-omero
  Browse your OMERO database from within napari.
  ☆40Updated 2 weeks ago
• bioio-devs / bioio
  Image reading, metadata management, and image writing for Microscopy images in Python
  ☆111Updated last month
• glencoesoftware / raw2ometiff
  Raw format to OME-TIFF converter
  ☆56Updated last week
• ome / ome-zarr-py
  Implementation of next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆221Updated this week
• fideus-labs / ngff-zarr
  A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.
  ☆57Updated last week
• glencoesoftware / NGFF-Converter
  NGFF-Converter is a GUI application for conversion of bioimage formats into OME-NGFF (Next-Generation File Format) or OME-TIFF
  ☆35Updated 2 months ago
• ZEISS / pylibczirw
  A simple and easy-to-use Python wrapper for libCZI - a cross-platform C++ library intended for providing read and write access to CZI doc…
  ☆26Updated last month
• zeiss-microscopy / OAD
  Collection of tools and scripts useful to automate microscopy workflows in ZEN Blue using Python and Open Application Development tools a…
  ☆158Updated last week
• TheJacksonLaboratory / ezomero
  A module with convenience functions for writing Python code that interacts with OMERO.
  ☆46Updated last month
• multiview-stitcher / multiview-stitcher
  A toolbox for registering / fusing / stitching large multi-view / multi-positioning image datasets in 2-3D.
  ☆102Updated this week
• labsyspharm / palom
  Piecewise alignment for layers of mosaics
  ☆35Updated 4 months ago
• BIOP / ijp-kheops
  ☆20Updated 2 weeks ago
• tlambert03 / ome-types
  native Python dataclasses for the OME data model
  ☆65Updated 3 weeks ago
• weigertlab / spotiflow
  Accurate and efficient spot detection for microscopy data
  ☆117Updated last week
• murphygroup / CellSegmentationEvaluator
  Evaluating the quality of a cell segmentation method without reference.
  ☆12Updated 6 months ago
• NHPatterson / wsireg
  multimodal whole slide image registration in a graph structure
  ☆100Updated last year
• usnistgov / WIPP
  Web Image Processing Pipeline (WIPP)
  ☆25Updated last month
• AllenCellModeling / aicspylibczi
  Python module utilizing libCZI for reading Zeiss CZI files.
  ☆46Updated 9 months ago
• ome / ngff
  Next-generation file format (NGFF) specifications for storing bioimaging data in the cloud.
  ☆152Updated this week
• spatial-image / multiscale-spatial-image
  Generate a multiscale, chunked, multi-dimensional spatial image data structure that can serialized to OME-NGFF.
  ☆55Updated 2 months ago
• krentzd / napari-clemreg
  An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)
  ☆20Updated 3 months ago
• napari / napari-plugin-template
  A template repo used to make new napari plugins
  ☆31Updated this week
• AllenCellModeling / aicsimageio
  Image Reading, Metadata Conversion, and Image Writing for Microscopy Images in Python
  ☆221Updated 2 months ago
• MouseLand / cellpose-napari
  napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool
  ☆61Updated last year