johnlees / bioinformaticsLinks
Utilities written for bioinformatics
☆17Updated 2 years ago
Alternatives and similar repositories for bioinformatics
Users that are interested in bioinformatics are comparing it to the libraries listed below
Sorting:
- Pauvre: QC and genome browser plotting Oxford Nanopore and PacBio long reads.☆54Updated 8 months ago
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- Generates an NCBI .tbl file of annotations on a genome.☆68Updated 7 years ago
- 🔗Genome assembly scaffolder using minimizer graphs☆84Updated 9 months ago
- PacBio hybrid error correction through iterative short read consensus☆61Updated 6 years ago
- Whole genome core alignments from multiple draft genomes☆13Updated 8 years ago
- ✏️ Genome assembly polishing & SNV detection☆69Updated 2 weeks ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆74Updated 8 years ago
- Automated de novo assembly of whole chloroplast genomes.☆46Updated 9 months ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Updated last year
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 3 weeks ago
- Synteny Imager☆63Updated 10 months ago
- A fast tool for hybrid genome assembly of long and short reads☆78Updated 5 years ago
- This is the codebase for Recycler, described in our manuscript: https://academic.oup.com/bioinformatics/article/33/4/475/2623362, by Roye…☆59Updated 4 years ago
- Scripts to calculate population genetics statistics☆55Updated 6 years ago
- An Efficient Swiss Army Knife for Population Genomic Analyses in R☆37Updated last year
- Read, manipulate and visualize 'Pairwise mApping Format' data in R☆74Updated 4 years ago
- Workshop on Genomics - Genomics Adventure☆42Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆57Updated 4 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A scalable bacterial genome assembly, annotation and analysis pipeline☆74Updated last year
- Error correction for Illumina RNA-seq reads☆67Updated last year
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 3 months ago
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A toolkit for annotation of transposable element families from unassembled sequence reads☆30Updated 2 years ago
- Recentrifuge: robust comparative analysis and contamination removal for metagenomics☆94Updated 2 months ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆61Updated 10 months ago
- Dual barcode and primer demultiplexing for MinION sequenced reads☆39Updated 2 years ago