Utilities written for bioinformatics
☆17Sep 27, 2022Updated 3 years ago
Alternatives and similar repositories for bioinformatics
Users that are interested in bioinformatics are comparing it to the libraries listed below
Sorting:
- Bioinformatics scripts☆14Dec 23, 2024Updated last year
- Bioinformatics analysis of SARS-CoV-2☆19Dec 28, 2023Updated 2 years ago
- Renames headers in FASTA file☆12Jun 28, 2017Updated 8 years ago
- Whole genome core alignments from multiple draft genomes☆13Sep 14, 2016Updated 9 years ago
- collection of bioinformatic scripts☆32May 3, 2024Updated last year
- Salmonella serotyping from genome sequencing data☆11Sep 3, 2018Updated 7 years ago
- Multilocus sequence typing by blast using the schemes from PubMLST☆30Jun 23, 2022Updated 3 years ago
- Pangenome analysis of eukaryotes.☆21Sep 21, 2020Updated 5 years ago
- 충남대학교 김준 연구실 튜토리얼☆46Jan 7, 2025Updated last year
- Workshop content for http://dib-training.readthedocs.org/en/pub/2016-01-13-adv-beg-shell.html☆13Feb 23, 2018Updated 8 years ago
- Python wrappers for programs that search for transposable elements☆19Jul 12, 2016Updated 9 years ago
- ☆18Jun 30, 2023Updated 2 years ago
- Syllabus and materials for bioinformatics lecture + lab☆21Apr 23, 2015Updated 10 years ago
- A placeholder for all my random scripts. Some scripts might eventually graduate and go to their own projects, so don't be surprised if a…☆17Nov 24, 2025Updated 3 months ago
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Sep 7, 2019Updated 6 years ago
- BITACORA: A Bioinformatics tool for gene family annotation☆53Dec 10, 2025Updated 3 months ago
- DIAMOND online documentation☆10Sep 2, 2020Updated 5 years ago
- SNP Pipeline is a pipeline for the production of SNP matrices from sequence data used in the phylogenetic analysis of pathogenic organism…☆66May 5, 2023Updated 2 years ago
- Bioinformatics Algorithms☆15Dec 17, 2013Updated 12 years ago
- (a) (p)erfect (c)ircle? ... tests DNA sequences for overlapping ends, then trims and rejoins, and aligns reads to test the join☆11Apr 29, 2021Updated 4 years ago
- tools for assessing the accuracy of genome assemblies☆35Apr 16, 2024Updated last year
- Uses cDBG to count unitigs in bacterial populations☆16Feb 15, 2023Updated 3 years ago
- Pipeline to generate NGS reads from a phylogeny☆39Sep 13, 2022Updated 3 years ago
- Introduction to Nanopore Sequencing - Prac material and presentations from The Omics Australia Tutorials Sydney (TOAST) workshop 19th - 2…☆10Jan 12, 2019Updated 7 years ago
- Scripts for Hill et al. (2022) doi:10.1093/molbev/msac085 🟣☆11Apr 28, 2023Updated 2 years ago
- Genealogical Estimation of Variant Age (GEVA)☆32Sep 30, 2021Updated 4 years ago
- Masks recombinant regions in an alignment based on ClonalFrameML output☆10May 18, 2018Updated 7 years ago
- Mycelium API Gateway, the ultimate solution for secure, flexible, and multi-tenant API management☆22Mar 12, 2026Updated last week
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- C++ wrapper to tabix indexer☆17Jun 27, 2025Updated 8 months ago
- Novel Adjacency Identification with Barcoded Reads☆13Apr 19, 2022Updated 3 years ago
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated last year
- Bring Your Own Bioinformatics☆27Apr 28, 2016Updated 9 years ago
- R scripts for NGS data visualization☆13Oct 1, 2025Updated 5 months ago
- Formats Roary output for viewing in FriPan☆11May 23, 2018Updated 7 years ago
- Swift 5 based turn based RPG game using GameplayKit and SpriteKit. WIP☆11Mar 28, 2019Updated 6 years ago
- Web scraper to retrieve protein data catalogued by the CAZy, UniProt, NCBI, GTDB and PDB websites/databases.☆18Jan 7, 2026Updated 2 months ago
- Population analysis PIPEline 🛠🧬☆23Mar 2, 2026Updated 2 weeks ago
- A snakemake workflow for de novo genome assembly. It produces chromosome-scale primary/phased assemblies complete with organelles (mitoch…☆33May 14, 2025Updated 10 months ago