kukionfr / VAMPIRE_openLinks
open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition
☆28Updated 3 years ago
Alternatives and similar repositories for VAMPIRE_open
Users that are interested in VAMPIRE_open are comparing it to the libraries listed below
Sorting:
- QuPath extension for Cellsparse☆19Updated 3 months ago
- ☆34Updated last year
- Piecewise alignment for layers of mosaics☆28Updated last month
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- 3D segmentation for cells and organoids of 3D multichannel images☆18Updated last month
- multimodal whole slide image registration in a graph structure☆90Updated last year
- Raw format to OME-TIFF converter☆55Updated 2 months ago
- Image registration (alignment) software for large microscopy images☆25Updated last year
- An Interactive Image Segmentation Filter for Multiplex Microscopy☆31Updated 6 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- Accelerated Pixel and Object Classifiers (APOC)☆56Updated 3 weeks ago
- The official QuPath extension for InstanSeg☆24Updated 3 weeks ago
- TissUUmaps is a browser-based tool for fast visualization and exploration of millions of data points overlaying a tissue sample. TissUUma…☆58Updated 2 months ago
- Whole slide image registration through wsireg in napari.☆13Updated 2 years ago
- QuPath extension to interactively align images☆24Updated last month
- ☆26Updated 3 months ago
- Development of PICASSO plugin for napari☆17Updated 2 years ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- Transfer trained StarDist models across imaging modalities☆3Updated 10 months ago
- ASHLAR: Alignment by Simultaneous Harmonization of Layer/Adjacency Registration☆144Updated 5 months ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆35Updated 8 months ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated 3 months ago
- A Python-based tool for parallelized conversion of image datasets from various formats to OME-Zarr, with support for distributed processi…☆11Updated last week
- ☆85Updated 4 months ago
- Microsopic Image Analyzer (MIA)☆28Updated last year
- A collection of resources on bioimage analysis and related tools and techniques☆14Updated 2 years ago
- Bio-Formats image file format to raw format converter☆94Updated last week
- A plugin to visualise 3D spatial single cell omics☆22Updated last month
- StarDist plugin for napari☆40Updated 11 months ago
- Interactive visualization of spatial omics data☆64Updated this week