open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition
☆30Apr 5, 2022Updated 4 years ago
Alternatives and similar repositories for VAMPIRE_open
Users that are interested in VAMPIRE_open are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- Model repository for bioimage.io☆17Aug 7, 2023Updated 2 years ago
- ☆14Sep 29, 2020Updated 5 years ago
- Google Colab notebook for Cellpose☆10Aug 21, 2025Updated 7 months ago
- MethodsJ2☆14May 6, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Apr 27, 2020Updated 5 years ago
- A Board Game to teach co-localization analysis☆15Nov 1, 2024Updated last year
- pMoSS (p-value Model using the Sample Size) is a Python code to model the p-value as an n-dependent function using Monte Carlo cross-vali…☆16Mar 12, 2024Updated 2 years ago
- ☆25May 16, 2023Updated 2 years ago
- List of openly available dataset generated by our lab☆13Apr 1, 2026Updated 2 weeks ago
- Run CellProfiler on Terra. Contains workflows that enable a full end-to-end Cell Painting pipeline.☆11May 22, 2024Updated last year
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Apr 21, 2025Updated 11 months ago
- Pythonic and parallelizable I/O for N-dimensional imaging data with OME metadata☆50Apr 10, 2026Updated last week
- Serverless GPU API endpoints on Runpod - Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Scripts for data and figure generation in SAVER paper☆18Jan 5, 2021Updated 5 years ago
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 7 months ago
- ☆17Dec 21, 2017Updated 8 years ago
- Python package for deep learning based image to image transformation☆53Mar 12, 2026Updated last month
- Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces☆40Sep 17, 2021Updated 4 years ago
- Robust and unbiased estimation of the background distribution for fluorescence microscopy.☆13Oct 13, 2025Updated 6 months ago
- Website for the BioImage Model zoo -- a model zoo for bioimage analysis.☆60Jun 30, 2025Updated 9 months ago
- ☆11Mar 24, 2023Updated 3 years ago
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆90Mar 3, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆27Sep 26, 2024Updated last year
- Deep Learning Library for Single Cell Analysis☆474Aug 30, 2024Updated last year
- "Defragmentation TS2: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: work…☆10Jun 6, 2023Updated 2 years ago
- Processing of histological data for cytoarchitecture analyses.☆21Feb 20, 2025Updated last year
- Analysis of TrackMate XML outputs in R☆17Mar 7, 2026Updated last month
- Single cell Morphology Quality Control (coSMicQC)☆11Apr 9, 2026Updated last week
- Modular, object-based analysis for ImageJ/Fiji☆16Mar 31, 2026Updated 2 weeks ago
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆46May 1, 2025Updated 11 months ago
- ☆199Jul 23, 2025Updated 8 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆16Jul 21, 2023Updated 2 years ago
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Computational workflows to assess phototoxicity in live-cell microscopy experiments☆11Sep 15, 2025Updated 7 months ago
- ☆14Feb 21, 2024Updated 2 years ago
- Exercise repository for the "Deep Learning for Microscopy Image Analysis" course at the MBL.☆10Aug 31, 2022Updated 3 years ago
- ☆211Jun 29, 2023Updated 2 years ago
- scPretrain: Multi-task self-supervised learning for cell type classification☆24Dec 24, 2021Updated 4 years ago