JonnyTran / OpenOmicsLinks
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
☆34Updated last year
Alternatives and similar repositories for OpenOmics
Users that are interested in OpenOmics are comparing it to the libraries listed below
Sorting:
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated 2 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- A Python package for gene network analysis☆32Updated 3 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 2 months ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆46Updated 2 years ago
- Shiny app to easily create publishable plots for scientific papers☆36Updated last month
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 4 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- Python interface to amino acid properties and IEDB☆57Updated 11 months ago
- BioInformatics Agent (BIA): Unleashing the Power of Large Language Models to Reshape Bioinformatics Workflow☆38Updated last year
- Comprehensive Python client for the Uniprot REST API☆50Updated 2 months ago
- ☆21Updated 5 months ago
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- A python library for creating simulated regulatory DNA sequences☆39Updated 2 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- accurate prediction of promoter activity and variant effects from massive parallel reporter assays☆41Updated 2 months ago
- ☆38Updated last year
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated 2 years ago
- Connect the dots in networks.☆19Updated 5 years ago
- Visualization and analysis platform for metabolic data and network pattern recognition☆39Updated 5 months ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 7 months ago
- Harmonizing pathway databases using Biological Expression Language (BEL)☆20Updated last year
- Inference of gene dependency from RNAi screening datasets.☆19Updated 5 years ago
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated last month