JonnyTran / OpenOmics

Related projects ⓘ

Alternatives and complementary repositories for OpenOmics

• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆24Updated last year
• BIMSBbioinfo / flexynesis
  A deep-learning based multi-modal data integration suite that aims to achieve synesis in a flexible manner
  ☆21Updated last month
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated last year
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆23Updated 6 months ago
• glasgowcompbio / pyMultiOmics
  Python toolbox for multi-omics data mapping and analysis
  ☆19Updated last year
• MaayanLab / blitzgsea
  Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …
  ☆40Updated 2 months ago
• BaderLab / EPIC
  This is the public repository for the EPIC tool.
  ☆17Updated 2 years ago
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated last week
• GreiffLab / immuneSIM
  ☆38Updated 11 months ago
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 2 years ago
• bowang-lab / BIONIC
  Biological Network Integration using Convolutions
  ☆59Updated 9 months ago
• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• epigen / KPNN
  Knowledge-primed neural networks
  ☆34Updated last year
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆34Updated 2 years ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆48Updated last year
• loosolab / UROPA
  Universal RObust Peak Annotator
  ☆15Updated 10 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆32Updated last month
• menchelab / MultiOme
  Network-based project to explore gene connectivity through biological scales
  ☆20Updated 2 weeks ago
• saezlab / cosmosR
  COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…
  ☆58Updated 3 months ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated last year
• devCellPy-Team / devCellPy
  devCellPy is a Python package designed for hierarchical multilayered classification of cells based on single-cell RNA-sequencing.
  ☆22Updated 8 months ago
• chanzuckerberg / single-cell-curation
  Code and documentation for the curation of cellxgene datasets
  ☆38Updated this week
• JanZrimec / DeepExpression
  ☆32Updated last year
• cssblab / iOmicsPASS
  Data Integration tool utilizing network information for predictive analyses
  ☆16Updated last year
• mousepixels / sanbomics
  bioinformatics plotting and tools
  ☆53Updated 5 months ago
• nf-core / scnanoseq
  Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics
  ☆21Updated 3 weeks ago
• Genentech / iterative-perturb-seq
  Sequential Optimal Experimental Design of Perturbation Screens Guided by Multimodal Priors
  ☆33Updated 5 months ago
• DanHanh / scLinear
  ☆16Updated 3 months ago