Alternatives and similar repositories for OpenOmics

Users that are interested in OpenOmics are comparing it to the libraries listed below

• krassowski / multi-omics-state-of-the-field
  Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"
  ☆28Updated 2 years ago
• kundajelab / coessentiality
  Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)
  ☆27Updated 2 years ago
• krassowski / gsea-api
  Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)
  ☆15Updated 2 years ago
• openvax / pepdata
  Python interface to amino acid properties and IEDB
  ☆56Updated 9 months ago
• PathwayAndDataAnalysis / causalpath
  A project for exploring differentially active signaling paths related to proteomics datasets
  ☆42Updated 2 weeks ago
• kuijjerlab / retriever
  Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data
  ☆15Updated 3 years ago
• krishnanlab / PyGenePlexus
  A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…
  ☆20Updated last month
• SchubertLab / epytope
  ☆20Updated 3 months ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆37Updated 2 months ago
• KohlbacherLab / epytope
  Python-based framework for computational immunomics
  ☆13Updated last year
• stracquadaniolab / pygna
  A Python package for gene network analysis
  ☆32Updated 3 years ago
• bhklab / PGx_Guidelines
  ☆10Updated 3 years ago
• openvax / topiary
  Predict mutated T-cell epitopes from sequencing data
  ☆30Updated 4 months ago
• Shamir-Lab / NEMO
  ☆16Updated 5 years ago
• AlexsLemonade / OpenPBTA-manuscript
  The manuscript repository for the Open Pediatric Brain Tumor Atlas Project
  ☆13Updated 2 years ago
• CCSB-DFCI / HuRI_paper
  Code for the analyses in the human reference interactome paper.
  ☆27Updated 2 years ago
• Metaboverse / Metaboverse
  Visualization and analysis platform for metabolic data and network pattern recognition
  ☆39Updated 3 months ago
• MaayanLab / maayanlab-bioinformatics
  A collection of useful functions for bioinformatics data analysis
  ☆24Updated last month
• gmiaslab / pyiomica
  PyIOmica (pyiomica) is a Python package for omics analyses.
  ☆15Updated 3 weeks ago
• BIMSBbioinfo / maui
  Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit
  ☆49Updated 2 years ago
• CancerRxGene / gdsctools
  Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )
  ☆36Updated 3 years ago
• cebel / pyuniprot
  Python package to query and analyse UniProt
  ☆25Updated 4 years ago
• masato-ogishi / Repitope
  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.
  ☆24Updated last year
• statbiophys / SONIA
  Infer selection pressures on features of amino acid CDR3 sequences.
  ☆25Updated last year
• viash-io / viash
  script + metadata = standalone component
  ☆42Updated last month
• VariantEffect / mavetools
  Useful functions for manipulating Multiplex Assay of Variant Effect datasets.
  ☆9Updated 5 months ago
• research-software-ecosystem / content
  A metadata commons to store research software metadata
  ☆41Updated this week
• Novartis / DRUG-seq
  DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline
  ☆32Updated 3 months ago
• jessegmeyerlab / proteomics-tutorial
  ☆62Updated last year
• broadinstitute / adapt
  A package for designing activity-informed nucleic acid diagnostics for viruses.
  ☆32Updated 2 years ago