JonnyTran / OpenOmicsLinks
A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
☆35Updated last year
Alternatives and similar repositories for OpenOmics
Users that are interested in OpenOmics are comparing it to the libraries listed below
Sorting:
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Updated 2 years ago
- A Python package for gene network analysis☆32Updated 3 years ago
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆15Updated 2 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- ☆23Updated 6 months ago
- The manuscript repository for the Open Pediatric Brain Tumor Atlas Project☆13Updated 2 years ago
- A collection of useful functions for bioinformatics data analysis☆25Updated 2 months ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- A network based gene classification library to generate genome wide predictions about genes that are functionally similar to the input ge…☆20Updated this week
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆52Updated 4 months ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆18Updated 5 years ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Updated 3 years ago
- Python interface to amino acid properties and IEDB☆57Updated 11 months ago
- A metadata commons to store research software metadata☆43Updated this week
- Bayesian analysis of MPRA and other high-throughput genomic assays☆10Updated 5 years ago
- Biological Network Integration using Convolutions☆62Updated last year
- A python package to explore pathways, diseases and drugs associated to a list of targets (genes, proteins, etc)☆19Updated 10 months ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆18Updated 5 years ago
- Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis☆23Updated this week
- Multi-omics Autoencoder Integration: Deep learning-based heterogenous data analysis toolkit☆49Updated 2 years ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 4 years ago
- Inference of gene dependency from RNAi screening datasets.☆19Updated 5 years ago
- ☆36Updated 7 months ago
- ☆38Updated last year
- Proteomic Data Analysis with Python (pandas, scikit-learn, numpy, scipy)☆24Updated 2 years ago
- DRUGZ software☆23Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 8 months ago
- FUNctional toolKIt platform for multi-omic functional analysis. An standardised pipeline to analysis transcriptomic, proteomic, phospho…☆14Updated 3 years ago
- Predicting the impact of mutations on kinase–substrate phosphorylation☆10Updated 2 years ago