A bioinformatics API to interface with public multi-omics bio databases for wicked fast data integration.
☆38Jul 10, 2024Updated 2 years ago
Alternatives and similar repositories for OpenOmics
Users that are interested in OpenOmics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pandas API for multiple Gene Set Enrichment Analysis implementations in Python (GSEApy, cudaGSEA, GSEA)☆16Apr 13, 2026Updated 3 months ago
- Python toolbox for multi-omics data mapping and analysis☆28Apr 13, 2023Updated 3 years ago
- PDB-CAT aims to automatically categorize the mmCIF PDB structures based on the type of interaction between atoms in the protein and the l…☆15Jan 21, 2026Updated 6 months ago
- This is the repository which contains the code that was used to generate the results and figures of the “Single-cell RNA-sequencing revea…☆13Apr 14, 2026Updated 3 months ago
- A software toolkit for the interconversion of standard data models for phenotypic data☆16Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- This repository attempts to implement a neural net that leverages the transformer architecture to predict peptide properties (retention t…☆11Nov 22, 2024Updated last year
- Clinical Whole Genome and Exome Sequencing Pipeline☆31Oct 27, 2025Updated 8 months ago
- Software and analysis of metabolism studies across multiple cancer types☆11Sep 5, 2017Updated 8 years ago
- A command-line interface and python module for R's GSVA bioconductor package☆14Jul 8, 2018Updated 8 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Jul 6, 2023Updated 3 years ago
- Simple tokenised template system for SGE☆10Mar 1, 2023Updated 3 years ago
- Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures…☆19Jul 3, 2024Updated 2 years ago
- protobuf-pydantic-gen is a Python code generator that turns Protocol Buffer schemas into Pydantic and SQLModel models. It keeps protobuf …☆19Jun 28, 2026Updated 3 weeks ago
- MATLAB implementation of Gene Set Enrichment Analysis (GSEA) method for finding pathways which can show more complex relation between cha…☆10Sep 7, 2022Updated 3 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Z Hu et al. The repertoire of serous ovarian cancer non-genetic heterogeneity revealed by single-cell sequencing of normal fallopian tube…☆13Nov 22, 2020Updated 5 years ago
- Python and UNIX CLI utilities to simplify interaction with the NIH/NCI Genomics Data Commons☆31Oct 11, 2018Updated 7 years ago
- a R package to identify neoantigens from NGS data☆18Jun 29, 2017Updated 9 years ago
- deploy a snakemake pipeline directly from version control (under development)☆26Jun 18, 2026Updated last month
- ☆19Mar 11, 2024Updated 2 years ago
- A declarative API for writing XML documents for HUPO PSI-MS mzML and mzIdentML☆26Apr 17, 2026Updated 3 months ago
- A library to assist with a variety of -omic analyses. Included are tools for proteomics, transcriptomics, and genomics.☆16Aug 3, 2023Updated 2 years ago
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Transcriptomic classifier for Muscle-Invasive Bladder Cancer☆16Oct 5, 2022Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Open-source software pipeline for cancer classification from high-throughput data using machine learning.☆19Feb 19, 2019Updated 7 years ago
- Peptide Correlation analysis☆12Oct 3, 2024Updated last year
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆19Mar 7, 2020Updated 6 years ago
- Launch a distributed R server on a cluster from a remote R session☆12Apr 23, 2022Updated 4 years ago
- Single sample pathway analysis tools for omics data☆15Nov 9, 2024Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆14Jun 9, 2026Updated last month
- customizable robust Independent Component Analysis (ICA)☆12Sep 16, 2024Updated last year
- Repository for the family history/pedigree project☆13Jun 17, 2026Updated last month
- TreeView component for Dash framework☆19Jun 8, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- TCGA data acquisition and processing for Project Cognoma☆23Apr 19, 2018Updated 8 years ago
- NGS duplicate marking☆20Apr 6, 2021Updated 5 years ago
- R package for metabolic enzyme enrichment anaylsis☆14Oct 24, 2025Updated 9 months ago
- An R package for multi-dimensional pathway enrichment analysis☆18Jan 8, 2026Updated 6 months ago
- A Bio2BEL package for integrating pathway-related information from KEGG in BEL☆13Feb 11, 2022Updated 4 years ago
- Introduction to Cloud Computing for Genomics☆21Updated this week
- FELLA: an R package for Metabolomics data enrichment through diffusion☆24Jan 23, 2026Updated 6 months ago