Alternatives and similar repositories for GWAS:

Users that are interested in GWAS are comparing it to the libraries listed below

• precimed / pleiofdr
  Pleiotropy-informed conditional and conjunctional false discovery rate
  ☆28Updated last year
• YangLabHKUST / XPASS
  Cross-population analysis using GWAS summary statistics
  ☆18Updated 8 months ago
• precimed / mostest
  Multivariate Omnibus Statistical Test
  ☆22Updated 8 months ago
• cnfoley / hyprcoloc
  R package for performing high dimensional multi-trait colocalization analyses using GWAS summary data
  ☆47Updated 4 years ago
• umich-cphds / createUKBphenome
  Create a PheWAS code based phenome using ICD9 and ICD10 data from baskets of the UK biobank
  ☆25Updated last year
• erwinerdem / STEAP
  Single cell Type Enrichment Analysis for Phenotypes (STEAP)
  ☆12Updated 3 years ago
• yuanzhongshang / PMR
  ☆23Updated 4 years ago
• huwenboshi / hess
  Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
  ☆42Updated 6 years ago
• precimed / mixer
  Causal Mixture Model for GWAS summary statistics
  ☆71Updated last year
• cuelee / pleio
  ☆18Updated last year
• dhglab / Broad-transcriptomic-dysregulation-across-the-cerebral-cortex-in-ASD
  Code accompanying the manuscript "Broad transcriptomic dysregulation across the cerebral cortex in ASD".
  ☆13Updated 2 years ago
• ChongWuLab / SUMMIT
  Summary-level Unified Method for Modeling Integrated Transcriptome
  ☆10Updated last year
• StatFunGen / pecotmr
  Post-GWAS enrichment, colocalization, TWAS and Mendelian Randomization to integrate molecular QTL and GWAS.
  ☆21Updated 2 weeks ago
• Annefeng / PBK-QC-pipeline
  Partners Biobank genomics data QC
  ☆25Updated 4 years ago
• jean997 / cause
  R package for CAUSE
  ☆54Updated last year
• hakyim / TO-DELETE-PrediXcan
  Code for the in-dev PrediXcan Project
  ☆27Updated 2 years ago
• BioPsyk / cleansumstats
  Convert GWAS sumstat files into a common format with a common reference for positions, rsids and effect alleles.
  ☆14Updated last month
• jinghuazhao / EWAS-fusion
  Epigenomewide Association Studies (EWAS) with FUnctional Summary-based ImputatiON (FUSION)
  ☆12Updated last year
• hakyimlab / summary-gwas-imputation
  harmonization, liftover, and imputation of summary statistics from GWAS
  ☆31Updated 4 years ago
• rhhao / csMR
  Perform cell-stratified MR analysis through integrating GWAS and QTL data
  ☆24Updated 5 months ago
• wouterpeyrot / CCGWAS
  ☆19Updated 2 years ago
• josefin-werme / LAVA
  ☆60Updated 8 months ago
• astheeggeggs / PHESANT
  PHESANT - PHEnome Scan ANalysis Tool (pheWAS, Mendelian randomisation (MR)-pheWAS etc.) in UK Biobank
  ☆18Updated 2 years ago
• TiffanyAmariuta / TCSC
  TCSC (Tissue co-regulation score regression) is a statistical genetics method to identify causal tissues in diseases and complex traits.
  ☆13Updated 5 months ago
• jrs95 / hyprcoloc
  Hypothesis Prioritisation in multi-trait Colocalization
  ☆52Updated 11 months ago
• mancusolab / FactorGo
  Software to infer latent pleiotropic components from GWAS summary data
  ☆13Updated last month
• precimed / python_convert
  A collection of various utilities for GWAS summary statistics
  ☆27Updated 10 months ago
• marcoralab / MRcovid
  ☆11Updated 2 years ago
• gamazonlab / MR-JTI
  ☆56Updated 2 months ago