A Transformer Architecture Based on BERT and 2D Convolutional Neural Network to Identify DNA Enhancers from Sequence Information
☆27May 4, 2022Updated 4 years ago
Alternatives and similar repositories for bert-enhancer
Users that are interested in bert-enhancer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Knowledge distillation on DNABERT (DistilBERT and MiniLM techniques) for promoter identification.☆27Nov 3, 2022Updated 3 years ago
- ☆33Oct 27, 2021Updated 4 years ago
- DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome☆780Jan 22, 2026Updated 8 months ago
- Bioinformatics 2020: FastSK: Fast and Accurate Sequence Classification by making gkm-svm faster and scalable. https://fastsk.readthedocs.…☆21Dec 8, 2022Updated 3 years ago
- This repository contains all DeepCLIP Python code☆11May 30, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆12Nov 26, 2023Updated 2 years ago
- ☆33Dec 2, 2022Updated 3 years ago
- ☆17Mar 18, 2023Updated 3 years ago
- The MolE pre-training framework to learn general molecular representations from unlabeled structures☆12May 26, 2025Updated last year
- Code for the paper "Generating and designing DNA with deep generative models" (arXiv:1712.06148)☆43Apr 14, 2018Updated 8 years ago
- ☆11Mar 16, 2020Updated 6 years ago
- Official PyTorch Implementation of ADKF-IFT from Meta-learning Adaptive Deep Kernel Gaussian Processes for Molecular Property Prediction …☆11Jun 5, 2023Updated 3 years ago
- Unet, ResUnet, DenseUnet, SE-ResUnet, Dual Attention ResUnet, Attention Gates ResUnet☆18May 8, 2021Updated 5 years ago
- Mol2vec notebooks for use with Binder service☆29Mar 24, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Prediction of horizontal gene transfer (HGT) using graph convolutional network☆13Apr 25, 2022Updated 4 years ago
- Conservation analysis of homologous proteins with Python☆13Jul 11, 2021Updated 5 years ago
- Monitorización de alumnos en la plataforma Moodle☆13Sep 23, 2026Updated 2 weeks ago
- Amino Acid Embedding Representation as Machine Learning Features☆21Aug 3, 2018Updated 8 years ago
- Neural Bacteriocin Identifier - a recurrent neural network based software to predict bacteriocins from protein sequences.☆18Mar 25, 2023Updated 3 years ago
- Perl scripts for analysis RIC-seq data☆11Feb 6, 2020Updated 6 years ago
- Predict binding affinity of ligand-protein complexes using Graph Neural Networks. The model is implemented using PyTorch Geometric and ba…☆11Nov 26, 2022Updated 3 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- Contrastive learning of protein representations with graph neural networks for structural and functional annotations☆11Apr 23, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆13Oct 19, 2023Updated 2 years ago
- Video Summarization Transformer: Implementation in PyTorch of the Transformer model for video summarisation☆10Oct 27, 2020Updated 5 years ago
- 2024 PyCon Korea 튜토리얼☆12Nov 8, 2024Updated last year
- An Integrated Package for Long Non-Coding RNA Identification Utilizing Logarithm-Distance, Multi-Scale Structural Information and EIIP-Ba…☆15Sep 28, 2024Updated 2 years ago
- SuperCell for Cytometry data☆13Oct 14, 2025Updated 11 months ago
- Importing and manipulating Hi-C data in R☆12Updated this week
- Deep learning for Metagenome Assembly Error Detection☆26Nov 30, 2020Updated 5 years ago
- Detect key Units in mosaic Tandem Repeats from representative reads from the same locus☆10Aug 2, 2023Updated 3 years ago
- GIANT (Gene-based data Integration and ANalysis Technique) is a method for large-scale joint analyses of atlas-level single cell data.☆14Jun 13, 2023Updated 3 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Graph-based representation learning method for protein function prediction☆24Aug 25, 2025Updated last year
- ☆12Oct 4, 2021Updated 5 years ago
- Orchestrating Hi-C analysis with Bioconductor☆11Updated this week
- BertSNR: an interpretable deep learning framework for single nucleotide resolution identification of transcription factor binding sites b…☆13May 27, 2025Updated last year
- Curated structures submitted to the RNA-Puzzles experiment. Download as a zip file https://github.com/mmagnus/RNA-Puzzles-submission/arch…☆11Apr 6, 2023Updated 3 years ago
- ☆13Oct 25, 2025Updated 11 months ago
- The Vini in silico model of cancer☆12Mar 7, 2026Updated 7 months ago