ychuest / Awesome-LLMs-meet-genomesLinks
Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in genomes.
☆77Updated last week
Alternatives and similar repositories for Awesome-LLMs-meet-genomes
Users that are interested in Awesome-LLMs-meet-genomes are comparing it to the libraries listed below
Sorting:
- ☆76Updated last year
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆107Updated 6 months ago
- RNA-seq prediction with deep convolutional neural networks.☆185Updated last month
- ☆36Updated last week
- ☆65Updated 9 months ago
- Genomic Pre-trained Network☆273Updated 2 weeks ago
- Computational Optimization of DNA Activity (CODA)☆60Updated 4 months ago
- Benchmarks for classification of genomic sequences☆149Updated last week
- ☆31Updated 6 months ago
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆122Updated 9 months ago
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆68Updated last month
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆177Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- deep learning-inspired explainable sequence model for transcription initiation☆97Updated 5 months ago
- ☆20Updated 2 months ago
- ☆90Updated 9 months ago
- gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.☆269Updated 3 weeks ago
- ☆42Updated last year
- Nature Biotechnology: Ultra-fast, sensitive detection of protein remote homologs using deep dense retrieval☆115Updated 11 months ago
- Multi-class signal peptide prediction and structure decoding model.☆89Updated 6 months ago
- Genomic language model predicts protein co-regulation and function☆82Updated 4 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆43Updated 10 months ago
- ☆66Updated 5 months ago
- ☆89Updated last month
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated last year
- Orthrus is a mature RNA model for RNA property prediction. It uses a mamba encoder backbone, a variant of state-space models specifical…☆70Updated last week
- Predicting dynamic cellular protein-RNA interactions using deep learning and in vivo RNA structure☆65Updated last year
- ☆75Updated 2 months ago
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆20Updated last year
- This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'☆95Updated 2 years ago