Alternatives and similar repositories for Awesome-LLMs-meet-genomes

Users that are interested in Awesome-LLMs-meet-genomes are comparing it to the libraries listed below

• ntranoslab / esm-variants
  ☆74Updated last year
• kundajelab / DART-Eval
  ☆34Updated last month
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆29Updated 4 months ago
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆60Updated 2 months ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆61Updated last week
• amberT15 / LLM_eval
  Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"
  ☆19Updated last year
• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆160Updated 2 weeks ago
• lingxusb / Riboformer
  ☆20Updated 3 weeks ago
• lingxusb / megaDNA
  ☆63Updated 8 months ago
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆36Updated last year
• TranslationalBioinformaticsUnit / TransformersInGenomicsPapers
  A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and …
  ☆23Updated 6 months ago
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆94Updated 3 months ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆43Updated 7 months ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆75Updated 11 months ago
• TencentAILabHealthcare / DNAGPT
  ☆39Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆53Updated last year
• fteufel / signalp-6.0
  Multi-class signal peptide prediction and structure decoding model.
  ☆87Updated 4 months ago
• Illumina / PromoterAI
  ☆54Updated this week
• Illumina / PrimateAI-3D
  ☆66Updated 4 months ago
• jmschrei / tfmodisco-lite
  A lite implementation of tfmodisco, a motif discovery algorithm for genomics experiments.
  ☆80Updated this week
• MAGICS-LAB / DNABERT_S
  [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
  ☆103Updated 4 months ago
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆37Updated last month
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆105Updated 2 years ago
• y-hwang / gLM
  Genomic language model predicts protein co-regulation and function
  ☆81Updated 3 months ago
• GET-Foundation / get_model
  A modular framework for multimodal cross-cell-type transcriptional regulation models
  ☆79Updated 2 months ago
• d-laub / basenji2-pytorch
  PyTorch implementation of Basenji2.
  ☆15Updated last month
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆33Updated 2 months ago
• wassermanlab / ExplaiNN
  ExplaiNN: interpretable and transparent neural networks for genomics
  ☆49Updated 2 months ago
• a96123155 / UTR-LM
  ☆88Updated 8 months ago
• OATML-Markslab / EVE
  Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…
  ☆177Updated last year