Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in genomes.
☆154Jul 10, 2026Updated last month
Alternatives and similar repositories for Awesome-LLMs-meet-genomes
Users that are interested in Awesome-LLMs-meet-genomes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- JanusDNA☆32Mar 19, 2026Updated 4 months ago
- PDLLMs: A group of tailored DNA large language models (LLMs) for analyzing plant genomes☆54Jun 5, 2026Updated 2 months ago
- PlantCAD: cross-species modeling of plant genomes☆99Updated this week
- Bi-Directional Equivariant Long-Range DNA Sequence Modeling☆249Mar 18, 2026Updated 4 months ago
- Library to extract embeddings for DNA sequences using BioFM genomics foundation model☆21Aug 13, 2025Updated 11 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Foundation Models for Genomics & Transcriptomics☆908Feb 24, 2026Updated 5 months ago
- Code and dataset for SNP2Vec paper☆21May 12, 2023Updated 3 years ago
- [ICML 2024] VQDNA: Unleashing the Power of Vector Quantization for Multi-Species Genomic Sequence Modeling☆10Sep 22, 2024Updated last year
- ☆27Jun 5, 2025Updated last year
- Benchmarks for classification of genomic sequences☆181Aug 14, 2025Updated 11 months ago
- A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.☆319May 28, 2025Updated last year
- Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of …☆40Mar 27, 2025Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆132Oct 31, 2024Updated last year
- Genomic Pre-trained Network☆350Jul 25, 2026Updated 2 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆29Dec 15, 2025Updated 7 months ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆52Oct 4, 2024Updated last year
- Repository for codes, analyses and visualizations for the CAMI II challenges☆15Sep 4, 2023Updated 2 years ago
- [ICML 2025] Fast and Low-Cost Genomic Foundation Models via Outlier Removal.☆19Jun 19, 2025Updated last year
- PanEffect is a JavaScript framework to explore variant effects across a pangenome. The tool has two views that allows a user to (1) expl…☆13Jan 30, 2024Updated 2 years ago
- Code repository for the manuscript: Nucleotide dependency analysis of DNA language models reveals genomic functional elements☆30Aug 3, 2026Updated last week
- Provide RNA and DNA Foundation Model Benchmarks and Applications☆29Nov 26, 2025Updated 8 months ago
- ☆19May 30, 2026Updated 2 months ago
- Repeat and haplotype aware error correction in nanopore sequencing reads with DeChat☆29Apr 24, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Official implementation for HyenaDNA, a long-range genomic foundation model built with Hyena☆800Apr 22, 2025Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆25Jun 26, 2024Updated 2 years ago
- [ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome☆510Jan 1, 2026Updated 7 months ago
- Official release of OneGenome-Rice models.☆25Jun 16, 2026Updated last month
- ☆526Jul 15, 2026Updated 3 weeks ago
- ☆21Feb 15, 2025Updated last year
- ☆13Apr 23, 2025Updated last year
- [NPJ AI] A foundation model for individual genome modelling☆27May 9, 2026Updated 3 months ago
- Tutorial on large language models for genomics☆285Jun 5, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The resources of LucaOne, including: the model code, training scripts, embedding inference code, and trained checkpoints.☆366May 25, 2026Updated 2 months ago
- A curated list of awesome resources, papers, datasets, and tools related to Genomic LLMs. This repository aims to provide a comprehensive…☆18Aug 7, 2024Updated 2 years ago
- ☆25Apr 22, 2026Updated 3 months ago
- A new module for Megatron-LM training to enhance motif memory in Genomic☆18Feb 2, 2026Updated 6 months ago
- Agent self-driven repository on bio-agent papers, i.e. papers on LLM-based agents in biology and medicine.☆109Feb 10, 2026Updated 6 months ago
- GENA-LM is a transformer masked language model trained on human DNA sequence.