ychuest / Awesome-LLMs-meet-genomesLinks
Explore a comprehensive collection of basic theories, applications, papers, and best practices about Large Language Models (LLMs) in genomes.
☆105Updated 3 months ago
Alternatives and similar repositories for Awesome-LLMs-meet-genomes
Users that are interested in Awesome-LLMs-meet-genomes are comparing it to the libraries listed below
Sorting:
- ☆82Updated 2 years ago
- ☆33Updated 9 months ago
- ☆74Updated last year
- ☆42Updated 3 months ago
- deep learning-inspired explainable sequence model for transcription initiation☆98Updated 8 months ago
- [ISMB 2025] DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models☆117Updated 9 months ago
- RNA-seq prediction with deep convolutional neural networks.☆202Updated 2 months ago
- ☆23Updated 5 months ago
- Genomic Pre-trained Network☆305Updated last week
- Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.☆82Updated last month
- Benchmarks for classification of genomic sequences☆164Updated 3 months ago
- Official repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Jo…☆185Updated last year
- BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity☆56Updated last year
- ☆14Updated 3 weeks ago
- Computational Optimization of DNA Activity (CODA)☆64Updated 7 months ago
- The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)☆36Updated 2 years ago
- Toolkit for training hyenaDNA-based autoregressive language models on DNA sequences.☆49Updated last year
- Code repository for study ''Evaluating the representational power of pre-trained DNA language models for regulatory genomics"☆22Updated last year
- Multi-class signal peptide prediction and structure decoding model.☆96Updated 9 months ago
- C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.☆81Updated last year
- Benchmarking DNA Language Models on Biologically Meaningful Tasks☆127Updated last year
- code to run sei and obtain sei and sequence class predictions☆109Updated 2 years ago
- A curated repository designed to serve as a comprehensive guide for researchers interested in the intersection of Transformer models and …☆26Updated 10 months ago
- ☆45Updated 2 years ago
- ☆72Updated last week
- Genomic language model predicts protein co-regulation and function☆83Updated 7 months ago
- A deep learning approach to predicting transcription initiation from sequence at single nucleotide resolution☆14Updated 3 weeks ago
- ☆80Updated 4 months ago
- code to run EPInformer for gene expression prediction and gene-enhancer link prediction☆43Updated last month
- ☆91Updated last year