Alternatives and similar repositories for Awesome-LLMs-meet-genomes:

Users that are interested in Awesome-LLMs-meet-genomes are comparing it to the libraries listed below

• calico / borzoi
  RNA-seq prediction with deep convolutional neural networks.
  ☆122Updated 2 months ago
• xCompass-AI / GeneCompass
  GeneCompass
  ☆70Updated 7 months ago
• ntranoslab / esm-variants
  ☆72Updated last year
• jzhoulab / puffin
  deep learning-inspired explainable sequence model for transcription initiation
  ☆93Updated 3 months ago
• d-laub / basenji2-pytorch
  PyTorch implementation of Basenji2.
  ☆15Updated last year
• sjgosai / boda2
  Computational Optimization of DNA Activity (CODA)
  ☆55Updated last month
• de-Boer-Lab / random-promoter-dream-challenge-2022
  ☆26Updated 3 weeks ago
• johahi / borzoi-pytorch
  Pytorch implementation of the Borzoi model from Calico, and Flashzoi, a 3x faster Borzoi enhancement.
  ☆38Updated last month
• FunctionLab / sei-framework
  code to run sei and obtain sei and sequence class predictions
  ☆97Updated 2 years ago
• MAGICS-LAB / DNABERT_S
  DNABERT_S: Learning Species-Aware DNA Embedding with Genome Foundation Models
  ☆88Updated 2 weeks ago
• tanjimin / C.Origami
  C.Origami, a prediction and screening framework for cell type-specific 3D chromatin structure.
  ☆70Updated 7 months ago
• a96123155 / UTR-LM
  ☆73Updated 4 months ago
• lingxusb / Riboformer
  ☆18Updated 11 months ago
• JackieHanLab / TOSICA
  Transformer for One-Stop Interpretable Cell-type Annotation
  ☆134Updated 11 months ago
• ZjGaothu / EpiGePT
  EpiGePT: a pretrained transformer-based language model for context-specific human epigenomics
  ☆20Updated 2 months ago
• kundajelab / DART-Eval
  ☆27Updated last month
• SuperBianC / scMulan
  Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.
  ☆56Updated 8 months ago
• JoshuaChou2018 / AutoBA
  An AI Agent for Fully Automated Multi-omic Analyses
  ☆152Updated 3 months ago
• broadinstitute / depmap_omics
  What you need to process the Quarterly DepMap-Omics releases from Terra
  ☆114Updated last week
• Illumina / PrimateAI-3D
  ☆64Updated 7 months ago
• tianshilu / pMTnet
  Deep Learning the T Cell Receptor Binding Specificity of Neoantigen
  ☆77Updated 2 years ago
• TencentAILabHealthcare / DNAGPT
  ☆37Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆50Updated 9 months ago
• jkobject / geneformer
  ☆52Updated last year
• songlab-cal / gpn
  Genomic Pre-trained Network
  ☆237Updated last week
• dohlee / chromoformer
  The official code implementation for Chromoformer in PyTorch. (Lee et al., Nature Communications. 2022)
  ☆34Updated last year
• RTH-tools / crispron
  CRISPR Cas9 ontarget prediction software
  ☆26Updated 2 weeks ago
• pinellolab / EPInformer
  code to run EPInformer for gene expression prediction and gene-enhancer links prioritization
  ☆35Updated 3 months ago
• lulab / OligoFormer
  ☆21Updated last month
• BackofenLab / RNAProt
  Modelling RBP binding preferences to predict RPB binding sites
  ☆11Updated last year